Non-Coding RNA Search

Pig2-132A04a

Sequence:


               
               GCTCCCCTCCCCTCATCCACCTCCCGTCCGCGCCTGAGGAACAGATGGAGCGATCATCCT
CTTCATTCCGCCAGAAGGGCCCCGCTGCTCTGGAATGAGTTATGCGCCACGGATGACATG
CATGTTGACTGCTCACTTATCAAGTCCCCAGGCTTCGAGTGGCAGCGGGTCGTCCGGCAG
TTTGCGCGGTAGACAGTGACGATCTCCACCAAAAGCCCATGTCCCCCAGGTGTGAAGAAG
TCAAGAAAAACCTACTGGAGTGGACACACACTGGGATTCACCCTCTTCTCCCACGAGGAG
CCAGGTGAACTTGAGGGACTCAGGCCACCTCACCGGGCTCCACGGGGACTGTACCTAAGG
CTGCAAAGAACCCAAGCTGCAGAGAGAAGATACGGTTTGGAATCCAAGTCTGCCCCTTGC
TGCCTGGGTGACATAAGGCAATTTACTTATCCCGGAACACTGGTCTCTTCTGTATAAGTA
ATGGGGATAGTTTGTGCCCCTCTGGGGCCAAAGTATGTTTGAGCTGAGCACCTTTGTGAA
ATCAGAGGTACAGGTGGATAACCAAAGTATGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCCCTCCCCTCATCCACCTCCCGTCCGCGCCTGAGGAACAGATGGAGCGATCATCCT
CTTCATTCCGCCAGAAGGGCCCCGCTGCTCTGGAATGAGTTATGCGCCACGGATGACATG
CATGTTGACTGCTCACTTATCAAGTCCCCAGGCTTCGAGTGGCAGCGGGTCGTCCGGCAG
TTTGCGCGGTAGACAGTGACGATCTCCACCAAAAGCCCATGTCCCCCAGGTGTGAAGAAG
TCAAGAAAAACCTACTGGAGTGGACACACACTGGGATTCACCCTCTTCTCCCACGAGGAG
CCAGGTGAACTTGAGGGACTCAGGCCACCTCACCGGGCTCCACGGGGACTGTACCTAAGG
CTGCAAAGAACCCAAGCTGCAGAGAGAAGATACGGTTTGGAATCCAAGTCTGCCCCTTGC
TGCCTGGGTGACATAAGGCAATTTACTTATCCCGGAACACTGGTCTCTTCTGTATAAGTA
ATGGGGATAGTTTGTGCCCCTCTGGGGCCAAAGTATGTTTGAGCTGAGCACCTTTGTGAA
ATCAGAGGTACAGGTGGATAACCAAAGTATGTCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               278-390, - strand, RNAz p=0.99898
               

               
               468-568, + strand, RNAz p=0.534028

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-390, - strand, RNAz p=0.99898
               

               
               468-568, + strand, RNAz p=0.534028

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               95-574, gnl|bosTau2|chr22 (20925009-20925505)
               

               
               95-574, gnl|canFam2|chr20 (22416682-22416301)
               

               
               95-574, gnl|dasNov1|scaffold_31425 (3677-3891)
               

               
               95-574, gnl|echTel1|scaffold_323679 (7061-6713)
               

               
               95-574, gnl|hg17|chr3 (72871032-72871389)
               

               
               95-574, gnl|Hg17|chr3 (72871037-72871536)
               

               
               95-574, gnl|loxAfr1|scaffold_27498 (20318-19918)
               

               
               95-574, gnl|mm7|chr6 (100653380-100653674)
               

               
               95-574, gnl|oryCun1|scaffold_129228 (14740-14502)
               

               
               95-574, gnl|panTro1|chr2 (74839665-74840021)
               

               
               95-574, gnl|rheMac2|chr2 (63483030-63482674)
               

               
               95-574, gnl|rn3|chr4 (135714313-135714584)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-574, gnl|bosTau2|chr22 (20925009-20925505)
               

               
               95-574, gnl|canFam2|chr20 (22416682-22416301)
               

               
               95-574, gnl|dasNov1|scaffold_31425 (3677-3891)
               

               
               95-574, gnl|echTel1|scaffold_323679 (7061-6713)
               

               
               95-574, gnl|hg17|chr3 (72871032-72871389)
               

               
               95-574, gnl|Hg17|chr3 (72871037-72871536)
               

               
               95-574, gnl|loxAfr1|scaffold_27498 (20318-19918)
               

               
               95-574, gnl|mm7|chr6 (100653380-100653674)
               

               
               95-574, gnl|oryCun1|scaffold_129228 (14740-14502)
               

               
               95-574, gnl|panTro1|chr2 (74839665-74840021)
               

               
               95-574, gnl|rheMac2|chr2 (63483030-63482674)
               

               
               95-574, gnl|rn3|chr4 (135714313-135714584)

	278-390, - strand, RNAz p=0.99898
	468-568, + strand, RNAz p=0.534028

	95-574, gnl\|bosTau2\|chr22 (20925009-20925505)
	95-574, gnl\|canFam2\|chr20 (22416682-22416301)
	95-574, gnl\|dasNov1\|scaffold_31425 (3677-3891)
	95-574, gnl\|echTel1\|scaffold_323679 (7061-6713)
	95-574, gnl\|hg17\|chr3 (72871032-72871389)
	95-574, gnl\|Hg17\|chr3 (72871037-72871536)
	95-574, gnl\|loxAfr1\|scaffold_27498 (20318-19918)
	95-574, gnl\|mm7\|chr6 (100653380-100653674)
	95-574, gnl\|oryCun1\|scaffold_129228 (14740-14502)
	95-574, gnl\|panTro1\|chr2 (74839665-74840021)
	95-574, gnl\|rheMac2\|chr2 (63483030-63482674)
	95-574, gnl\|rn3\|chr4 (135714313-135714584)