Pig2-132E11
|
TTTATTATGGGGTGTGTGTGTGTGTGTGTGATGGCAGGAAGAGACAAAGACTTGTCGGCA
GGTTGTTGTATCAGAATACGCAAAAATGCACCAGTTCCTGAAGGAGGAGGAGCAGCTGCA
GCTCCAGCTGCTGGAAATGGAGGAAAGAGAGAACCTGAAGAAACTGCGGGATAATGAGAT
CAAGCTGACCCAGCAAATGAGAAGCCTGAGCAAAGTCATCGGACAGATAGAGTCTACTTG
TCAGAACTCGATTGTAGAGTCTTTTGAGGATGTGAGAGGAATCCTGGAAAGGAGTGAGCC
ATTCTTGCTTCAGAGTCCAGAGGCCACCACCACTGAACTGACTCTGTGCCACATCACTGG
AATGAGGGAGATGCTAAGAAAATTCAGCACAGATATAACTCTAGATCCAGCTACAGCCAA
TGCCTATCTCATCTTGTCTGAGGACCTGAAAAGTGTGAAACATGGAGGAATCCGACAGCA
GTTACCTGACAACCCAGAAAGATTTGACCAGTCTGCCACCGTGCTGGGGGCTCATATCTT
CACCTGCGGGAGACACTACTGGGAGGTGGAAGTGGGCAACAAGAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTATTATGGGGTGTGTGTGTGTGTGTGTGATGGCAGGAAGAGACAAAGACTTGTCGGCA
GGTTGTTGTATCAGAATACGCAAAAATGCACCAGTTCCTGAAGGAGGAGGAGCAGCTGCA
GCTCCAGCTGCTGGAAATGGAGGAAAGAGAGAACCTGAAGAAACTGCGGGATAATGAGAT
CAAGCTGACCCAGCAAATGAGAAGCCTGAGCAAAGTCATCGGACAGATAGAGTCTACTTG
TCAGAACTCGATTGTAGAGTCTTTTGAGGATGTGAGAGGAATCCTGGAAAGGAGTGAGCC
ATTCTTGCTTCAGAGTCCAGAGGCCACCACCACTGAACTGACTCTGTGCCACATCACTGG
AATGAGGGAGATGCTAAGAAAATTCAGCACAGATATAACTCTAGATCCAGCTACAGCCAA
TGCCTATCTCATCTTGTCTGAGGACCTGAAAAGTGTGAAACATGGAGGAATCCGACAGCA
GTTACCTGACAACCCAGAAAGATTTGACCAGTCTGCCACCGTGCTGGGGGCTCATATCTT
CACCTGCGGGAGACACTACTGGGAGGTGGAAGTGGGCAACAAGAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
168-243, + strand, RNAmicro p=0.998485 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
168-243, + strand, RNAmicro p=0.998485 |
|
36-198, BY710062 RIKEN full-length enriched, ES cells Mus musculus cDNA
(dbj|BY710062.1|), blast E-value=2e-23, identity=84.05% |
|
34-198, C0348H02-5N NIA Mouse Undifferentiated ES Cell cDNA Library (Long)
(gb|CA533398.1|), blast E-value=6e-20, identity=83.03% |
|
36-198, AGENCOURT_15764784 NIH_MGC_204 Mus musculus cDNA clone (gb|CF616858.1|),
blast E-value=2e-23, identity=84.05% |
|
34-198, A0108D11-5 NIA Mouse Undifferentiated ES Cell cDNA Library (Long 1)
(gb|CF892353.1|), blast E-value=6e-20, identity=83.03% |
|
34-198, A0116D12-5 NIA Mouse Undifferentiated ES Cell cDNA Library (Long 1)
(gb|CF892910.1|), blast E-value=6e-20, identity=83.03% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
36-198, BY710062 RIKEN full-length enriched, ES cells Mus musculus cDNA
(dbj|BY710062.1|), blast E-value=2e-23, identity=84.05% |
|
34-198, C0348H02-5N NIA Mouse Undifferentiated ES Cell cDNA Library (Long)
(gb|CA533398.1|), blast E-value=6e-20, identity=83.03% |
|
36-198, AGENCOURT_15764784 NIH_MGC_204 Mus musculus cDNA clone (gb|CF616858.1|),
blast E-value=2e-23, identity=84.05% |
|
34-198, A0108D11-5 NIA Mouse Undifferentiated ES Cell cDNA Library (Long 1)
(gb|CF892353.1|), blast E-value=6e-20, identity=83.03% |
|
34-198, A0116D12-5 NIA Mouse Undifferentiated ES Cell cDNA Library (Long 1)
(gb|CF892910.1|), blast E-value=6e-20, identity=83.03% |
|
12-269, gnl|bosTau2|chr27 (10418582-10418325) |
|
12-269, gnl|Hg17|chr4 (189438377-189438786) |
|
12-269, gnl|Mm7|chr8 (41924264-41923999) |
| |
|
392-585, gnl|bosTau2|chr27 (10414155-10413962) |
|
392-585, gnl|canFam2|chr16 (45914990-45914521) |
|
392-585, gnl|danRer3|chr21 (30350722-30351190) |
|
392-585, gnl|dasNov1|scaffold_56611 (6756-7225) |
|
392-585, gnl|echTel1|scaffold_200658 (17575-17106) |
|
392-585, gnl|fr1|chrUn (185754476-185754014) |
|
392-585, gnl|galGal2|chr16 (120545-120079) |
|
392-585, gnl|hg17|chr4 (189443118-189443587) |
|
392-585, gnl|Hg17|chr4 (189443127-189443320) |
|
392-585, gnl|loxAfr1|scaffold_1750 (4002-3533) |
|
392-585, gnl|mm7|chr8 (41916130-41915661) |
|
392-585, gnl|Mm7|chr8 (41916119-41915926) |
|
392-585, gnl|monDom2|scaffold_238 (210393-210847) |
|
392-585, gnl|oryCun1|scaffold_209954 (31206-30737) |
|
392-585, gnl|panTro1|chr3 (207690116-207690585) |
|
392-585, gnl|rheMac2|chr5 (180286146-180286615) |
|
392-585, gnl|rn3|chr16 (52336176-52336645) |
|
392-585, gnl|tetNig1|chr3 (10830082-10830542) |
|
392-585, gnl|xenTro1|scaffold_690 (315295-314826) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
12-269, gnl|bosTau2|chr27 (10418582-10418325) |
|
12-269, gnl|Hg17|chr4 (189438377-189438786) |
|
12-269, gnl|Mm7|chr8 (41924264-41923999) |
| |
|
392-585, gnl|bosTau2|chr27 (10414155-10413962) |
|
392-585, gnl|canFam2|chr16 (45914990-45914521) |
|
392-585, gnl|danRer3|chr21 (30350722-30351190) |
|
392-585, gnl|dasNov1|scaffold_56611 (6756-7225) |
|
392-585, gnl|echTel1|scaffold_200658 (17575-17106) |
|
392-585, gnl|fr1|chrUn (185754476-185754014) |
|
392-585, gnl|galGal2|chr16 (120545-120079) |
|
392-585, gnl|hg17|chr4 (189443118-189443587) |
|
392-585, gnl|Hg17|chr4 (189443127-189443320) |
|
392-585, gnl|loxAfr1|scaffold_1750 (4002-3533) |
|
392-585, gnl|mm7|chr8 (41916130-41915661) |
|
392-585, gnl|Mm7|chr8 (41916119-41915926) |
|
392-585, gnl|monDom2|scaffold_238 (210393-210847) |
|
392-585, gnl|oryCun1|scaffold_209954 (31206-30737) |
|
392-585, gnl|panTro1|chr3 (207690116-207690585) |
|
392-585, gnl|rheMac2|chr5 (180286146-180286615) |
|
392-585, gnl|rn3|chr16 (52336176-52336645) |
|
392-585, gnl|tetNig1|chr3 (10830082-10830542) |
|
392-585, gnl|xenTro1|scaffold_690 (315295-314826) |
