Non-Coding RNA Search

Pig2-132N19a

Sequence:


               
               TGCCACCTATGGGAACACTGAGACATTTGCCTTACTCTCATTCCTCCTCTTTCCTGTGTA
AAACGCAGATAGATGACCAAATACTCTGGGACAAACTAAATATGCCTGTCTTTGTGCTAA
AATATTTCATGAATCTTAAGAGTGTCCAAAGGCTCTTTATTGTCCCTGTTTGTAATCACT
TTCTTACTCTATACACTATATGTATCCTTCTTTATCTGTCACTCTTTCTGCCTGAGGACT
CCTCTGAGGCTTTTATATTATAGTCTTAACCGTTTCAAAGCAGAAGCTGTGAAATTGGTA
TTACTGTTTTTAAAAAACTACTTCCCCTATTTAAAAGAAAATATTACATCCTAAGAGGGG
AAAGTGATTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCACCTATGGGAACACTGAGACATTTGCCTTACTCTCATTCCTCCTCTTTCCTGTGTA
AAACGCAGATAGATGACCAAATACTCTGGGACAAACTAAATATGCCTGTCTTTGTGCTAA
AATATTTCATGAATCTTAAGAGTGTCCAAAGGCTCTTTATTGTCCCTGTTTGTAATCACT
TTCTTACTCTATACACTATATGTATCCTTCTTTATCTGTCACTCTTTCTGCCTGAGGACT
CCTCTGAGGCTTTTATATTATAGTCTTAACCGTTTCAAAGCAGAAGCTGTGAAATTGGTA
TTACTGTTTTTAAAAAACTACTTCCCCTATTTAAAAGAAAATATTACATCCTAAGAGGGG
AAAGTGATTTTCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               254-371, + strand, RNAz p=0.79732
               

               
               258-371, - strand, RNAz p=0.804841

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-371, + strand, RNAz p=0.79732
               

               
               258-371, - strand, RNAz p=0.804841

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-371, gnl|bosTau2|chr6 (28881755-28881385)
               

               
               1-371, gnl|canFam2|chr3 (77487048-77486488)
               

               
               1-371, gnl|dasNov1|scaffold_3100 (75354-74815)
               

               
               1-371, gnl|echTel1|scaffold_310108 (110996-111568)
               

               
               1-371, gnl|galGal2|chr4 (70168310-70167791)
               

               
               1-371, gnl|hg17|chr4 (37272094-37272653)
               

               
               1-371, gnl|Hg17|chr4 (37272359-37272726)
               

               
               1-371, gnl|loxAfr1|scaffold_680 (36931-36369)
               

               
               1-371, gnl|mm7|chr5 (63162846-63163394)
               

               
               1-371, gnl|Mm7|chr5 (63163113-63163462)
               

               
               1-371, gnl|monDom2|scaffold_26 (2319018-2319577)
               

               
               1-371, gnl|oryCun1|scaffold_204294 (34626-35172)
               

               
               1-371, gnl|panTro1|chr3 (39938088-39938646)
               

               
               1-371, gnl|rheMac2|chr5 (32429780-32430328)
               

               
               1-371, gnl|rn3|chr14 (47039211-47039756)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-371, gnl|bosTau2|chr6 (28881755-28881385)
               

               
               1-371, gnl|canFam2|chr3 (77487048-77486488)
               

               
               1-371, gnl|dasNov1|scaffold_3100 (75354-74815)
               

               
               1-371, gnl|echTel1|scaffold_310108 (110996-111568)
               

               
               1-371, gnl|galGal2|chr4 (70168310-70167791)
               

               
               1-371, gnl|hg17|chr4 (37272094-37272653)
               

               
               1-371, gnl|Hg17|chr4 (37272359-37272726)
               

               
               1-371, gnl|loxAfr1|scaffold_680 (36931-36369)
               

               
               1-371, gnl|mm7|chr5 (63162846-63163394)
               

               
               1-371, gnl|Mm7|chr5 (63163113-63163462)
               

               
               1-371, gnl|monDom2|scaffold_26 (2319018-2319577)
               

               
               1-371, gnl|oryCun1|scaffold_204294 (34626-35172)
               

               
               1-371, gnl|panTro1|chr3 (39938088-39938646)
               

               
               1-371, gnl|rheMac2|chr5 (32429780-32430328)
               

               
               1-371, gnl|rn3|chr14 (47039211-47039756)

	254-371, + strand, RNAz p=0.79732
	258-371, - strand, RNAz p=0.804841

	1-371, gnl\|bosTau2\|chr6 (28881755-28881385)
	1-371, gnl\|canFam2\|chr3 (77487048-77486488)
	1-371, gnl\|dasNov1\|scaffold_3100 (75354-74815)
	1-371, gnl\|echTel1\|scaffold_310108 (110996-111568)
	1-371, gnl\|galGal2\|chr4 (70168310-70167791)
	1-371, gnl\|hg17\|chr4 (37272094-37272653)
	1-371, gnl\|Hg17\|chr4 (37272359-37272726)
	1-371, gnl\|loxAfr1\|scaffold_680 (36931-36369)
	1-371, gnl\|mm7\|chr5 (63162846-63163394)
	1-371, gnl\|Mm7\|chr5 (63163113-63163462)
	1-371, gnl\|monDom2\|scaffold_26 (2319018-2319577)
	1-371, gnl\|oryCun1\|scaffold_204294 (34626-35172)
	1-371, gnl\|panTro1\|chr3 (39938088-39938646)
	1-371, gnl\|rheMac2\|chr5 (32429780-32430328)
	1-371, gnl\|rn3\|chr14 (47039211-47039756)