Non-Coding RNA Search

Pig2-133K14

Sequence:


               
               GCCGCTTTGATTTCGCTCTTGCTTCTCTCCTGGAGCTCGACTGGGAACATCGCCTCTCCG
GGGGCAGCAGCATTGTGCGCAGAGCCAGGCAGGAGCTGCCTGCGGGGCATGGAAGAAGCC
TTCTTGGCAGCCTCGAGAGGAGCCAGGGGAGTGAGTGAGCGCTGTTGCCTGTGACCCAGG
CGTCCGGCTGTGCCCCTCTGCCTGGGGAGCCCGTCCACCCAGAGCTCTCTCCCCTCCTTG
CCTTCCAGATCTTCCTCTGCAGAGCCCGGTGAAGCCAGTCTGTACAGAAGCCAAACCAGT
GGGGAGCATGGAGCTGCTGTCCACGCCCCACAGCATCGAGGTCAACAATATCACCTGCGA
CTCCTTCCGCATCTCCTGGGCCATGGAGAACAGTGACCTGGAGCGGGTCACCCACTACTT
CATTGACCTGAACAAGAAGGAGAATAAGAACTCCAACAAGTTCAAGCACCGGGATGTCCC
CACCAAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTTTGATTTCGCTCTTGCTTCTCTCCTGGAGCTCGACTGGGAACATCGCCTCTCCG
GGGGCAGCAGCATTGTGCGCAGAGCCAGGCAGGAGCTGCCTGCGGGGCATGGAAGAAGCC
TTCTTGGCAGCCTCGAGAGGAGCCAGGGGAGTGAGTGAGCGCTGTTGCCTGTGACCCAGG
CGTCCGGCTGTGCCCCTCTGCCTGGGGAGCCCGTCCACCCAGAGCTCTCTCCCCTCCTTG
CCTTCCAGATCTTCCTCTGCAGAGCCCGGTGAAGCCAGTCTGTACAGAAGCCAAACCAGT
GGGGAGCATGGAGCTGCTGTCCACGCCCCACAGCATCGAGGTCAACAATATCACCTGCGA
CTCCTTCCGCATCTCCTGGGCCATGGAGAACAGTGACCTGGAGCGGGTCACCCACTACTT
CATTGACCTGAACAAGAAGGAGAATAAGAACTCCAACAAGTTCAAGCACCGGGATGTCCC
CACCAAGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               69-171, - strand, RNAz p=0.634148

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-171, - strand, RNAz p=0.634148

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014759, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014759, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-278, gnl|bosTau2|chr8 (31325282-31325541)
               

               
               1-278, gnl|canFam2|chr25 (38017282-38016209)
               

               
               1-278, gnl|dasNov1|scaffold_35537 (7927-6992)
               

               
               1-278, gnl|echTel1|scaffold_313141 (41105-40096)
               

               
               1-278, gnl|hg17|chr8 (22144718-22145710)
               

               
               1-278, gnl|Hg17|chr8 (22145525-22145254)
               

               
               1-278, gnl|loxAfr1|scaffold_25055 (11166-12180)
               

               
               1-278, gnl|mm7|chr14 (65102809-65101809)
               

               
               1-278, gnl|Mm7|chr14 (65101993-65102287)
               

               
               1-278, gnl|monDom2|scaffold_1 (73336376-73335186)
               

               
               1-278, gnl|oryCun1|scaffold_121274 (5955-5081)
               

               
               1-278, gnl|panTro1|chr7 (23077695-23078691)
               

               
               1-278, gnl|rheMac2|chr8 (22154979-22155965)
               

               
               1-278, gnl|rn3|chr15 (50877078-50876086)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr8 (31325282-31325541)
               

               
               1-278, gnl|canFam2|chr25 (38017282-38016209)
               

               
               1-278, gnl|dasNov1|scaffold_35537 (7927-6992)
               

               
               1-278, gnl|echTel1|scaffold_313141 (41105-40096)
               

               
               1-278, gnl|hg17|chr8 (22144718-22145710)
               

               
               1-278, gnl|Hg17|chr8 (22145525-22145254)
               

               
               1-278, gnl|loxAfr1|scaffold_25055 (11166-12180)
               

               
               1-278, gnl|mm7|chr14 (65102809-65101809)
               

               
               1-278, gnl|Mm7|chr14 (65101993-65102287)
               

               
               1-278, gnl|monDom2|scaffold_1 (73336376-73335186)
               

               
               1-278, gnl|oryCun1|scaffold_121274 (5955-5081)
               

               
               1-278, gnl|panTro1|chr7 (23077695-23078691)
               

               
               1-278, gnl|rheMac2|chr8 (22154979-22155965)
               

               
               1-278, gnl|rn3|chr15 (50877078-50876086)

	1-278, gnl\|bosTau2\|chr8 (31325282-31325541)
	1-278, gnl\|canFam2\|chr25 (38017282-38016209)
	1-278, gnl\|dasNov1\|scaffold_35537 (7927-6992)
	1-278, gnl\|echTel1\|scaffold_313141 (41105-40096)
	1-278, gnl\|hg17\|chr8 (22144718-22145710)
	1-278, gnl\|Hg17\|chr8 (22145525-22145254)
	1-278, gnl\|loxAfr1\|scaffold_25055 (11166-12180)
	1-278, gnl\|mm7\|chr14 (65102809-65101809)
	1-278, gnl\|Mm7\|chr14 (65101993-65102287)
	1-278, gnl\|monDom2\|scaffold_1 (73336376-73335186)
	1-278, gnl\|oryCun1\|scaffold_121274 (5955-5081)
	1-278, gnl\|panTro1\|chr7 (23077695-23078691)
	1-278, gnl\|rheMac2\|chr8 (22154979-22155965)
	1-278, gnl\|rn3\|chr15 (50877078-50876086)