Non-Coding RNA Search

Pig2-133N20

Sequence:


               
               GGCTTTGCTGGCTGGAGGTCCTCACTTCGGGTCTTTGGGTAGGGAGATGGTGGTCCCTAC
AGAGAGGAGAGACCCCTAGGGAGTCCATGACAGGACGGGTTGCTGGAAAGAGGCAGAGTT
GGGGCGCCCTGCAGGAGAGGACCAACTGTGGGGGCCGGTCTCAACCAAAGAAAGGAAATC
ACCGACGGGTTTCTGGGAGCGGGCGGGGGAAGGGGGGAGGCTGGCCGGAGGCGTTTCCGC
TCCCCGGGGAGCGAGCGCCTGGCTGTTCTTGGCTCCCGGCTGGAGCCATTAATCTCGCAG
CGGCGGGTGACCTGGATGCCAGGCATTCCTGAGCCCGGGCTGTTCCGCTGCGCCTGCCCG
CCCGCCGCTCCCTCCCGCTCCGGGCCCCGCCCCTCCCGCGCAGCAGGAGGAGGGACACTG
GGACAAAGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTGCTGGCTGGAGGTCCTCACTTCGGGTCTTTGGGTAGGGAGATGGTGGTCCCTAC
AGAGAGGAGAGACCCCTAGGGAGTCCATGACAGGACGGGTTGCTGGAAAGAGGCAGAGTT
GGGGCGCCCTGCAGGAGAGGACCAACTGTGGGGGCCGGTCTCAACCAAAGAAAGGAAATC
ACCGACGGGTTTCTGGGAGCGGGCGGGGGAAGGGGGGAGGCTGGCCGGAGGCGTTTCCGC
TCCCCGGGGAGCGAGCGCCTGGCTGTTCTTGGCTCCCGGCTGGAGCCATTAATCTCGCAG
CGGCGGGTGACCTGGATGCCAGGCATTCCTGAGCCCGGGCTGTTCCGCTGCGCCTGCCCG
CCCGCCGCTCCCTCCCGCTCCGGGCCCCGCCCCTCCCGCGCAGCAGGAGGAGGGACACTG
GGACAAAGGGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               144-332, + strand, RNAz p=0.992108

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-332, + strand, RNAz p=0.992108

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               130-430, gnl|bosTau2|chr1 (88090474-88090161)
               

               
               130-430, gnl|Hg17|chr3 (135566024-135565678)
               

               
               130-430, gnl|Mm7|chr9 (102418449-102418800)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-430, gnl|bosTau2|chr1 (88090474-88090161)
               

               
               130-430, gnl|Hg17|chr3 (135566024-135565678)
               

               
               130-430, gnl|Mm7|chr9 (102418449-102418800)

	130-430, gnl\|bosTau2\|chr1 (88090474-88090161)
	130-430, gnl\|Hg17\|chr3 (135566024-135565678)
	130-430, gnl\|Mm7\|chr9 (102418449-102418800)