Non-Coding RNA Search

Pig2-137N21

Sequence:


               
               GGAGCCCGGGGAGCCCGGAGTGGGGCTGTCGTCCACCAGGCCCAGCTCCCTGTGCAGAGC
TCGGTGCCGGACCGCGCTCAGCGTCCTCTCCCGCTTCTCTCTCGCCGCCCGGAGCTTGGT
GATGCTCAGCTTCAGGTCGAGCGGCTCGTCCAAGGAGTGCATGGTGGTGGGGGCGGGGGG
TGGCANCAGGCAGCGGGGGGCTCCCGAGCTGGTATTCAGGCAGGAACCTGGGAGAACATA
GGAGCCATGCGGTGACACTGTGACCCCAGACGCCTCCGTAGGCTGTACCCATAATAGCTC
ACAGGAGCAGAGAGGTTGTGGGTGTGGGTAGAGCCCCCGTGAGTGGCCCTGGTATCATGG
AGCCAACTACTGGCCCAGACCTAACCTGTCCACTTCCCACGAGACTTTTCTGGGACACAG
AGCTCACAGAGCCCATCCGGCCATGAATGGAGTTTCAGAGACACTGCCTCAGGTCACAGA
GCTAGGACATAGCAGAGCCATCCAATTCAAAGCCAGATCATCTTCCTGGAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCCGGGGAGCCCGGAGTGGGGCTGTCGTCCACCAGGCCCAGCTCCCTGTGCAGAGC
TCGGTGCCGGACCGCGCTCAGCGTCCTCTCCCGCTTCTCTCTCGCCGCCCGGAGCTTGGT
GATGCTCAGCTTCAGGTCGAGCGGCTCGTCCAAGGAGTGCATGGTGGTGGGGGCGGGGGG
TGGCANCAGGCAGCGGGGGGCTCCCGAGCTGGTATTCAGGCAGGAACCTGGGAGAACATA
GGAGCCATGCGGTGACACTGTGACCCCAGACGCCTCCGTAGGCTGTACCCATAATAGCTC
ACAGGAGCAGAGAGGTTGTGGGTGTGGGTAGAGCCCCCGTGAGTGGCCCTGGTATCATGG
AGCCAACTACTGGCCCAGACCTAACCTGTCCACTTCCCACGAGACTTTTCTGGGACACAG
AGCTCACAGAGCCCATCCGGCCATGAATGGAGTTTCAGAGACACTGCCTCAGGTCACAGA
GCTAGGACATAGCAGAGCCATCCAATTCAAAGCCAGATCATCTTCCTGGAACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               161-267, - strand, RNAz p=0.931315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-267, - strand, RNAz p=0.931315

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-324, gnl|bosTau2|chr25 (4285058-4284722)
               

               
               1-324, gnl|Hg17|chr16 (4322444-4322127)
               

               
               1-324, gnl|Mm7|chr16 (4280581-4280294)
               


               
               360-534, gnl|bosTau2|chr25 (4284648-4284476)
               

               
               360-534, gnl|Mm7|chr16 (4280255-4280095)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr25 (4285058-4284722)
               

               
               1-324, gnl|Hg17|chr16 (4322444-4322127)
               

               
               1-324, gnl|Mm7|chr16 (4280581-4280294)
               


               
               360-534, gnl|bosTau2|chr25 (4284648-4284476)
               

               
               360-534, gnl|Mm7|chr16 (4280255-4280095)

	1-324, gnl\|bosTau2\|chr25 (4285058-4284722)
	1-324, gnl\|Hg17\|chr16 (4322444-4322127)
	1-324, gnl\|Mm7\|chr16 (4280581-4280294)

	360-534, gnl\|bosTau2\|chr25 (4284648-4284476)
	360-534, gnl\|Mm7\|chr16 (4280255-4280095)