Non-Coding RNA Search

Pig2-13H04a

Sequence:


               
               GGCATCACGTTTTTTTACAGGAAGAAGGGAAATGGTTTTGAAAATGAAAGATTTGTAGCT
TCTCTTCCGTCAAAACCAACACCTCCTCTTTCTGCCTGACCCCGTCTCCCCTTCGGACAT
CTCTCTGGTTCAGGACCAATCCTCTCCTGGGGACTGTCCCCATCCACGTGCTGGCTGAGC
TCAGGAACCGTCCACCTGCCTCTTGGTGGGGCTGTGGCTCTGTCCTCCCAGGCCTAACCT
CAACAGCGACAAGGGGGCCCTGGATGAAGGGGCTGGAAGCCAAGGTGCAGAGCACCCTGT
CCCCTCACCAGCGCGCAGGCTTGGGGTGGCAAAGCCAACAGCCACCACTCGCCCTGGGTA
GGGAGTGGTACTGGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATCACGTTTTTTTACAGGAAGAAGGGAAATGGTTTTGAAAATGAAAGATTTGTAGCT
TCTCTTCCGTCAAAACCAACACCTCCTCTTTCTGCCTGACCCCGTCTCCCCTTCGGACAT
CTCTCTGGTTCAGGACCAATCCTCTCCTGGGGACTGTCCCCATCCACGTGCTGGCTGAGC
TCAGGAACCGTCCACCTGCCTCTTGGTGGGGCTGTGGCTCTGTCCTCCCAGGCCTAACCT
CAACAGCGACAAGGGGGCCCTGGATGAAGGGGCTGGAAGCCAAGGTGCAGAGCACCCTGT
CCCCTCACCAGCGCGCAGGCTTGGGGTGGCAAAGCCAACAGCCACCACTCGCCCTGGGTA
GGGAGTGGTACTGGTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               223-377, - strand, RNAz p=0.625338

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-377, - strand, RNAz p=0.625338

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018667, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018667, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               35-377, gnl|bosTau2|chr18 (14632214-14632560)
               

               
               35-377, gnl|canFam2|chr5 (84178563-84178051)
               

               
               35-377, gnl|dasNov1|scaffold_143839 (3816-3325)
               

               
               35-377, gnl|echTel1|scaffold_310537 (127705-127349)
               

               
               35-377, gnl|hg17|chr16 (66951161-66951692)
               

               
               35-377, gnl|Hg17|chr16 (66951705-66951346)
               

               
               35-377, gnl|mm7|chr8 (104852732-104853218)
               

               
               35-377, gnl|Mm7|chr8 (104853231-104852943)
               

               
               35-377, gnl|panTro1|chr18 (61265301-61265832)
               

               
               35-377, gnl|rheMac2|chr20 (66710668-66711179)
               

               
               35-377, gnl|rn3|chr19 (36118384-36118864)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-377, gnl|bosTau2|chr18 (14632214-14632560)
               

               
               35-377, gnl|canFam2|chr5 (84178563-84178051)
               

               
               35-377, gnl|dasNov1|scaffold_143839 (3816-3325)
               

               
               35-377, gnl|echTel1|scaffold_310537 (127705-127349)
               

               
               35-377, gnl|hg17|chr16 (66951161-66951692)
               

               
               35-377, gnl|Hg17|chr16 (66951705-66951346)
               

               
               35-377, gnl|mm7|chr8 (104852732-104853218)
               

               
               35-377, gnl|Mm7|chr8 (104853231-104852943)
               

               
               35-377, gnl|panTro1|chr18 (61265301-61265832)
               

               
               35-377, gnl|rheMac2|chr20 (66710668-66711179)
               

               
               35-377, gnl|rn3|chr19 (36118384-36118864)

	35-377, gnl\|bosTau2\|chr18 (14632214-14632560)
	35-377, gnl\|canFam2\|chr5 (84178563-84178051)
	35-377, gnl\|dasNov1\|scaffold_143839 (3816-3325)
	35-377, gnl\|echTel1\|scaffold_310537 (127705-127349)
	35-377, gnl\|hg17\|chr16 (66951161-66951692)
	35-377, gnl\|Hg17\|chr16 (66951705-66951346)
	35-377, gnl\|mm7\|chr8 (104852732-104853218)
	35-377, gnl\|Mm7\|chr8 (104853231-104852943)
	35-377, gnl\|panTro1\|chr18 (61265301-61265832)
	35-377, gnl\|rheMac2\|chr20 (66710668-66711179)
	35-377, gnl\|rn3\|chr19 (36118384-36118864)