Pig2-141O01
|
GCGCTACAACCAGCAGGGAAACAATGAGTCACTTCCTCCTCGACAATCAGTCACCATGGC
AACAGCGCCATGGTGACCAGCCAGTCCGTTTTACAGCAAGTCTCTCCAACCAGCCTGGAC
CCGGGCCACAATCTCCTCTCACCTGATGGTAAAATGATCTCAGTCTCAGGAGGAGGTTTG
CCCCCCGTCAGCACCTTGACGAATATCCACAGCCTGTCCCACCACAATCCTCAGCAATCT
CAAAACCTCATCATGACGCCCCTCTCTGGAGTCATGGCCATTGCACAAAGCCTCAACTCC
TCCCAACTCAGATGTCCCTGTCATCAACAGCGTGGCCGGCAGCCTGGCAGCCCTGCAGCC
CGTCCAGTTCTCCCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGCTACAACCAGCAGGGAAACAATGAGTCACTTCCTCCTCGACAATCAGTCACCATGGC
AACAGCGCCATGGTGACCAGCCAGTCCGTTTTACAGCAAGTCTCTCCAACCAGCCTGGAC
CCGGGCCACAATCTCCTCTCACCTGATGGTAAAATGATCTCAGTCTCAGGAGGAGGTTTG
CCCCCCGTCAGCACCTTGACGAATATCCACAGCCTGTCCCACCACAATCCTCAGCAATCT
CAAAACCTCATCATGACGCCCCTCTCTGGAGTCATGGCCATTGCACAAAGCCTCAACTCC
TCCCAACTCAGATGTCCCTGTCATCAACAGCGTGGCCGGCAGCCTGGCAGCCCTGCAGCC
CGTCCAGTTCTCCCA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
34-113, - strand, RNAmicro p=0.979034 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
34-113, - strand, RNAmicro p=0.979034 |
|
1-156, BP255834 Sugano cDNA library, kidney epithelial cell Homo sapiens
(dbj|BP255834.1|), blast E-value=0, identity=94.27% |
|
1-156, DA636799 KIDNE2 Homo sapiens cDNA clone KIDNE2019126 5', mRNA
(dbj|DA636799.1|), blast E-value=0, identity=94.23% |
|
1-156, wu05f05.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|AW002499.1|),
blast E-value=0, identity=95.54% |
|
1-156, 602725314F1 NIH_MGC_15 Homo sapiens cDNA clone IMAGE (gb|BG822302.1|),
blast E-value=0, identity=94.9% |
|
1-156, 4130379 BARC 8BOV Bos taurus cDNA clone 8BOV_54P18 5', mRNA
(gb|CO259063.1|), blast E-value=0, identity=93.63% |
|
1-156, LIB5338-042-A1-K1-D5 LIB5338 Canis familiaris cDNA clone
(gb|DN443138.1|), blast E-value=0, identity=93.63% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1-156, BP255834 Sugano cDNA library, kidney epithelial cell Homo sapiens
(dbj|BP255834.1|), blast E-value=0, identity=94.27% |
|
1-156, DA636799 KIDNE2 Homo sapiens cDNA clone KIDNE2019126 5', mRNA
(dbj|DA636799.1|), blast E-value=0, identity=94.23% |
|
1-156, wu05f05.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE (gb|AW002499.1|),
blast E-value=0, identity=95.54% |
|
1-156, 602725314F1 NIH_MGC_15 Homo sapiens cDNA clone IMAGE (gb|BG822302.1|),
blast E-value=0, identity=94.9% |
|
1-156, 4130379 BARC 8BOV Bos taurus cDNA clone 8BOV_54P18 5', mRNA
(gb|CO259063.1|), blast E-value=0, identity=93.63% |
|
1-156, LIB5338-042-A1-K1-D5 LIB5338 Canis familiaris cDNA clone
(gb|DN443138.1|), blast E-value=0, identity=93.63% |
|
1-156, gnl|bosTau2|chr19 (6862155-6862311) |
|
1-156, gnl|canFam2|chr9 (40781470-40781871) |
|
1-156, gnl|danRer3|chr15 (14653962-14653569) |
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1-156, gnl|dasNov1|scaffold_276 (33200-33601) |
|
1-156, gnl|echTel1|scaffold_258179 (1435-1033) |
|
1-156, gnl|fr1|chrUn (15675330-15675753) |
|
1-156, gnl|galGal2|chr19 (8197482-8197860) |
|
1-156, gnl|hg17|chr17 (33144426-33144827) |
|
1-156, gnl|Hg17|chr17 (33144780-33144624) |
|
1-156, gnl|loxAfr1|scaffold_62120 (7421-7822) |
|
1-156, gnl|mm7|chr11 (83952912-83952521) |
|
1-156, gnl|Mm7|chr11 (83952565-83952721) |
|
1-156, gnl|monDom2|scaffold_44 (6569447-6569852) |
|
1-156, gnl|oryCun1|scaffold_210255 (61656-61257) |
|
1-156, gnl|panTro1|chr19 (36321937-36322338) |
|
1-156, gnl|rheMac2|chr16 (47715467-47715868) |
|
1-156, gnl|rn3|chr10 (72176850-72176462) |
|
1-156, gnl|tetNig1|chr16 (3874765-3874335) |
|
1-156, gnl|xenTro1|scaffold_566 (632007-631626) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-156, gnl|bosTau2|chr19 (6862155-6862311) |
|
1-156, gnl|canFam2|chr9 (40781470-40781871) |
|
1-156, gnl|danRer3|chr15 (14653962-14653569) |
|
1-156, gnl|dasNov1|scaffold_276 (33200-33601) |
|
1-156, gnl|echTel1|scaffold_258179 (1435-1033) |
|
1-156, gnl|fr1|chrUn (15675330-15675753) |
|
1-156, gnl|galGal2|chr19 (8197482-8197860) |
|
1-156, gnl|hg17|chr17 (33144426-33144827) |
|
1-156, gnl|Hg17|chr17 (33144780-33144624) |
|
1-156, gnl|loxAfr1|scaffold_62120 (7421-7822) |
|
1-156, gnl|mm7|chr11 (83952912-83952521) |
|
1-156, gnl|Mm7|chr11 (83952565-83952721) |
|
1-156, gnl|monDom2|scaffold_44 (6569447-6569852) |
|
1-156, gnl|oryCun1|scaffold_210255 (61656-61257) |
|
1-156, gnl|panTro1|chr19 (36321937-36322338) |
|
1-156, gnl|rheMac2|chr16 (47715467-47715868) |
|
1-156, gnl|rn3|chr10 (72176850-72176462) |
|
1-156, gnl|tetNig1|chr16 (3874765-3874335) |
|
1-156, gnl|xenTro1|scaffold_566 (632007-631626) |
