Non-Coding RNA Search

Pig2-143H23

Sequence:


               
               GCAGATTATAGGGCCAGGCCATGTGCTAGGTGCTGCTGGGATCTGAAGGGATGCGAGGTA
GAGGAAACTTTTTGAAATAACTGAAGACCTGACGGCTGCTCTGAAGAAGCCCCTAGTCTA
GTATTTTAAACTCAGCTGGTTTAGCTAAGCCCCATGGCCGAGCTGGGAAGTGGGTTCCAG
ACAGCGTGAGAGAGGGCATCTGGTCACTGCTCTGTTCAAATTAGTTCCCTATCGAGGGCC
TGTTGGCCATTTGGAACAGACGTAAAAAGCCTGCCTCTCGGGGGAGACCCGTTCCCAGAG
GCGGTAAGGGTTGTGGTGTGTGCAGGGCAGGCAGGGCTGGCCGGGTTGGGATGGGGGATG
GTGGCCCGGGTGGCAGGCAGGGCAGCAAGGAGTTGCTCAGAGCAAGTGCTAAGCTGACGG
AGCAAAGGCATCTGCAGGAGGAGGCTGGGTCAGTGCAGCAACCCAGGGACACTCCCAGAG
AGGGCAAAAGGGACGCATCTTCTAAGTCAGGGTCCAGGGGAAGTGAAGGATTTTCCTGGG
GAAGGTCCACCACGTCCCCCCATCAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGATTATAGGGCCAGGCCATGTGCTAGGTGCTGCTGGGATCTGAAGGGATGCGAGGTA
GAGGAAACTTTTTGAAATAACTGAAGACCTGACGGCTGCTCTGAAGAAGCCCCTAGTCTA
GTATTTTAAACTCAGCTGGTTTAGCTAAGCCCCATGGCCGAGCTGGGAAGTGGGTTCCAG
ACAGCGTGAGAGAGGGCATCTGGTCACTGCTCTGTTCAAATTAGTTCCCTATCGAGGGCC
TGTTGGCCATTTGGAACAGACGTAAAAAGCCTGCCTCTCGGGGGAGACCCGTTCCCAGAG
GCGGTAAGGGTTGTGGTGTGTGCAGGGCAGGCAGGGCTGGCCGGGTTGGGATGGGGGATG
GTGGCCCGGGTGGCAGGCAGGGCAGCAAGGAGTTGCTCAGAGCAAGTGCTAAGCTGACGG
AGCAAAGGCATCTGCAGGAGGAGGCTGGGTCAGTGCAGCAACCCAGGGACACTCCCAGAG
AGGGCAAAAGGGACGCATCTTCTAAGTCAGGGTCCAGGGGAAGTGAAGGATTTTCCTGGG
GAAGGTCCACCACGTCCCCCCATCAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               219-334, - strand, RNAz p=0.788298

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-334, - strand, RNAz p=0.788298

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-340, gnl|bosTau2|chrX (21938339-21938671)
               

               
               4-340, gnl|Hg17|chrX (70153770-70154410)
               

               
               4-340, gnl|Mm7|chrX (96632256-96632564)
               


               
               359-562, gnl|bosTau2|chrX (21938728-21938928)
               

               
               359-562, gnl|Hg17|chrX (70154467-70154661)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-340, gnl|bosTau2|chrX (21938339-21938671)
               

               
               4-340, gnl|Hg17|chrX (70153770-70154410)
               

               
               4-340, gnl|Mm7|chrX (96632256-96632564)
               


               
               359-562, gnl|bosTau2|chrX (21938728-21938928)
               

               
               359-562, gnl|Hg17|chrX (70154467-70154661)

	4-340, gnl\|bosTau2\|chrX (21938339-21938671)
	4-340, gnl\|Hg17\|chrX (70153770-70154410)
	4-340, gnl\|Mm7\|chrX (96632256-96632564)

	359-562, gnl\|bosTau2\|chrX (21938728-21938928)
	359-562, gnl\|Hg17\|chrX (70154467-70154661)