Non-Coding RNA Search

Pig2-15C12

Sequence:


               
               GGGAATACCATCCTATTAGGCCAAGCATTCTCCTCCACAGTGCTTTTGGGTTGGTTTGAG
CCATGCACAGGAGACTCTTGTCATGAAGGAGGTGGGGGTATTCAGGGTCATACCCTGCCT
CCAGGAATTGGGCAGAACAGAATTGAGATCCACCCTGTGTATAATTCAGTCACTAAGATC
TCTTTTATGCTGGAAGGGAATGATCGGGGCAGTTTGTGCCCCCCATTCCTTTCAACACCC
CTCTCCCATGGCTCTGTGAGGAAAGCAGATGTACAAGATGTTGAGGAGGCAATGAATCAG
GCTTTCCCTTTTCCCCCCCGCCAGCAGCGTTGACACTCCCCAGGAGAAGAGGCCCCTAGA
CCGGTTACAAGCCCCAGAGCTGGCCAACGTGGCAGGTGGGTTCAGGGTGGGGAACTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAATACCATCCTATTAGGCCAAGCATTCTCCTCCACAGTGCTTTTGGGTTGGTTTGAG
CCATGCACAGGAGACTCTTGTCATGAAGGAGGTGGGGGTATTCAGGGTCATACCCTGCCT
CCAGGAATTGGGCAGAACAGAATTGAGATCCACCCTGTGTATAATTCAGTCACTAAGATC
TCTTTTATGCTGGAAGGGAATGATCGGGGCAGTTTGTGCCCCCCATTCCTTTCAACACCC
CTCTCCCATGGCTCTGTGAGGAAAGCAGATGTACAAGATGTTGAGGAGGCAATGAATCAG
GCTTTCCCTTTTCCCCCCCGCCAGCAGCGTTGACACTCCCCAGGAGAAGAGGCCCCTAGA
CCGGTTACAAGCCCCAGAGCTGGCCAACGTGGCAGGTGGGTTCAGGGTGGGGAACTCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               45-138, - strand, RNAz p=0.761641
               

               
               179-294, - strand, RNAz p=0.647569

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-138, - strand, RNAz p=0.761641
               

               
               179-294, - strand, RNAz p=0.647569

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-419, gnl|bosTau2|chr26 (15306262-15306667)
               

               
               8-419, gnl|Hg17|chr10 (103894446-103894861)
               

               
               8-419, gnl|Mm7|chr19 (45964342-45964743)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-419, gnl|bosTau2|chr26 (15306262-15306667)
               

               
               8-419, gnl|Hg17|chr10 (103894446-103894861)
               

               
               8-419, gnl|Mm7|chr19 (45964342-45964743)

	45-138, - strand, RNAz p=0.761641
	179-294, - strand, RNAz p=0.647569

	8-419, gnl\|bosTau2\|chr26 (15306262-15306667)
	8-419, gnl\|Hg17\|chr10 (103894446-103894861)
	8-419, gnl\|Mm7\|chr19 (45964342-45964743)