Non-Coding RNA Search

Pig2-17L13

Sequence:


               
               GGACGGGTAGATAGATGAGAATTGTCTTAGTAGTTTCTGCTCTTCCCAGACAACGTGCTA
TTAATAGACTAGCCAGACTGGCCCCGGGCTAAAAAGAAGCCCAGTTTGCTTGAGTTTATC
CCAGACCAGAGGTGAGAGAGGTCAGAACAGGGAGACCCTTTGTTCCAACATTTCAAAGTC
TTTTTAATTAAAGACAGGAAAGTGAAATGCATTTTCCTATCCCAAGTGATGATGCTCAAT
ATATGGGGACCTTACACAATGTAGCATCCTCCTGGGTCCTTGTTGCTTAAAGCTTAAAGA
GT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACGGGTAGATAGATGAGAATTGTCTTAGTAGTTTCTGCTCTTCCCAGACAACGTGCTA
TTAATAGACTAGCCAGACTGGCCCCGGGCTAAAAAGAAGCCCAGTTTGCTTGAGTTTATC
CCAGACCAGAGGTGAGAGAGGTCAGAACAGGGAGACCCTTTGTTCCAACATTTCAAAGTC
TTTTTAATTAAAGACAGGAAAGTGAAATGCATTTTCCTATCCCAAGTGATGATGCTCAAT
ATATGGGGACCTTACACAATGTAGCATCCTCCTGGGTCCTTGTTGCTTAAAGCTTAAAGA
GT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               84-179, - strand, RNAz p=0.845721

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-179, - strand, RNAz p=0.845721

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               4-302, gnl|bosTau2|chr19 (4064046-4063748)
               

               
               4-302, gnl|canFam2|chr9 (35597457-35597789)
               

               
               4-302, gnl|dasNov1|scaffold_804 (129638-129261)
               

               
               4-302, gnl|hg17|chr17 (52971993-52972341)
               

               
               4-302, gnl|Hg17|chr17 (52972016-52972328)
               

               
               4-302, gnl|loxAfr1|scaffold_3524 (37487-37132)
               

               
               4-302, gnl|mm7|chr11 (88540699-88540350)
               

               
               4-302, gnl|Mm7|chr11 (88540706-88540361)
               

               
               4-302, gnl|oryCun1|scaffold_197879 (7770-8117)
               

               
               4-302, gnl|panTro1|chr19_random (38707716-38708064)
               

               
               4-302, gnl|rheMac2|chr16 (41764973-41765321)
               

               
               4-302, gnl|rn3|chr10 (76916959-76916665)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-302, gnl|bosTau2|chr19 (4064046-4063748)
               

               
               4-302, gnl|canFam2|chr9 (35597457-35597789)
               

               
               4-302, gnl|dasNov1|scaffold_804 (129638-129261)
               

               
               4-302, gnl|hg17|chr17 (52971993-52972341)
               

               
               4-302, gnl|Hg17|chr17 (52972016-52972328)
               

               
               4-302, gnl|loxAfr1|scaffold_3524 (37487-37132)
               

               
               4-302, gnl|mm7|chr11 (88540699-88540350)
               

               
               4-302, gnl|Mm7|chr11 (88540706-88540361)
               

               
               4-302, gnl|oryCun1|scaffold_197879 (7770-8117)
               

               
               4-302, gnl|panTro1|chr19_random (38707716-38708064)
               

               
               4-302, gnl|rheMac2|chr16 (41764973-41765321)
               

               
               4-302, gnl|rn3|chr10 (76916959-76916665)

	4-302, gnl\|bosTau2\|chr19 (4064046-4063748)
	4-302, gnl\|canFam2\|chr9 (35597457-35597789)
	4-302, gnl\|dasNov1\|scaffold_804 (129638-129261)
	4-302, gnl\|hg17\|chr17 (52971993-52972341)
	4-302, gnl\|Hg17\|chr17 (52972016-52972328)
	4-302, gnl\|loxAfr1\|scaffold_3524 (37487-37132)
	4-302, gnl\|mm7\|chr11 (88540699-88540350)
	4-302, gnl\|Mm7\|chr11 (88540706-88540361)
	4-302, gnl\|oryCun1\|scaffold_197879 (7770-8117)
	4-302, gnl\|panTro1\|chr19_random (38707716-38708064)
	4-302, gnl\|rheMac2\|chr16 (41764973-41765321)
	4-302, gnl\|rn3\|chr10 (76916959-76916665)