Non-Coding RNA Search

Pig2-17N22

Sequence:


               
               GCGGACGCGTGGGTGTCAAATTGGGCAGCAGTTGGGAAATCAAGAGATACCGTCTCAGGA
TGATTCCCCAAATGATCCTGAAGTGGGGTGACTTCTGCCCCTGTTGGGAGAGATGTTTCA
ACTTCCAAATAAGAGCTATTAGGATATAGTGGGTTAGTTAAGGAGGCACCTTCATGCGTG
ACCTCTATGGTAACTTTTACAGAATCAAAATTACTTGGGTGATTGTGTGATCTTATAACC
TTGCTGACTTCTCCAGAGTTAACAGAGGACAAAGACATGATATCAGTACCACCACTTGGG
AAATGCATGTTCTCCTTCTTTCTGTGAGATGAGACTTTCTTTGGTGATCTCAGCACAGAA
GCATTCATAAGAAAACTTGAACCCTCAGATGCAAAAGAATTTTTTTCCAAACTGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGTGTCAAATTGGGCAGCAGTTGGGAAATCAAGAGATACCGTCTCAGGA
TGATTCCCCAAATGATCCTGAAGTGGGGTGACTTCTGCCCCTGTTGGGAGAGATGTTTCA
ACTTCCAAATAAGAGCTATTAGGATATAGTGGGTTAGTTAAGGAGGCACCTTCATGCGTG
ACCTCTATGGTAACTTTTACAGAATCAAAATTACTTGGGTGATTGTGTGATCTTATAACC
TTGCTGACTTCTCCAGAGTTAACAGAGGACAAAGACATGATATCAGTACCACCACTTGGG
AAATGCATGTTCTCCTTCTTTCTGTGAGATGAGACTTTCTTTGGTGATCTCAGCACAGAA
GCATTCATAAGAAAACTTGAACCCTCAGATGCAAAAGAATTTTTTTCCAAACTGATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               14-132, + strand, RNAz p=0.954955

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-132, + strand, RNAz p=0.954955

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               14-417, gnl|bosTau2|chr1 (22025841-22025441)
               

               
               14-417, gnl|canFam2|chr33 (7877059-7877945)
               

               
               14-417, gnl|dasNov1|scaffold_134142 (3838-4700)
               

               
               14-417, gnl|echTel1|scaffold_308896 (88163-87312)
               

               
               14-417, gnl|hg17|chr3 (99075358-99076247)
               

               
               14-417, gnl|Hg17|chr3 (99076170-99075767)
               

               
               14-417, gnl|mm7|chr16 (59494175-59493295)
               

               
               14-417, gnl|Mm7|chr16 (59493370-59493767)
               

               
               14-417, gnl|monDom2|scaffold_25 (18700790-18701673)
               

               
               14-417, gnl|oryCun1|scaffold_197269 (2847-2030)
               

               
               14-417, gnl|panTro1|chr2 (100231162-100232051)
               

               
               14-417, gnl|rheMac2|chr2 (18244028-18244905)
               

               
               14-417, gnl|rn3|chr11 (41618799-41619673)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-417, gnl|bosTau2|chr1 (22025841-22025441)
               

               
               14-417, gnl|canFam2|chr33 (7877059-7877945)
               

               
               14-417, gnl|dasNov1|scaffold_134142 (3838-4700)
               

               
               14-417, gnl|echTel1|scaffold_308896 (88163-87312)
               

               
               14-417, gnl|hg17|chr3 (99075358-99076247)
               

               
               14-417, gnl|Hg17|chr3 (99076170-99075767)
               

               
               14-417, gnl|mm7|chr16 (59494175-59493295)
               

               
               14-417, gnl|Mm7|chr16 (59493370-59493767)
               

               
               14-417, gnl|monDom2|scaffold_25 (18700790-18701673)
               

               
               14-417, gnl|oryCun1|scaffold_197269 (2847-2030)
               

               
               14-417, gnl|panTro1|chr2 (100231162-100232051)
               

               
               14-417, gnl|rheMac2|chr2 (18244028-18244905)
               

               
               14-417, gnl|rn3|chr11 (41618799-41619673)

	14-417, gnl\|bosTau2\|chr1 (22025841-22025441)
	14-417, gnl\|canFam2\|chr33 (7877059-7877945)
	14-417, gnl\|dasNov1\|scaffold_134142 (3838-4700)
	14-417, gnl\|echTel1\|scaffold_308896 (88163-87312)
	14-417, gnl\|hg17\|chr3 (99075358-99076247)
	14-417, gnl\|Hg17\|chr3 (99076170-99075767)
	14-417, gnl\|mm7\|chr16 (59494175-59493295)
	14-417, gnl\|Mm7\|chr16 (59493370-59493767)
	14-417, gnl\|monDom2\|scaffold_25 (18700790-18701673)
	14-417, gnl\|oryCun1\|scaffold_197269 (2847-2030)
	14-417, gnl\|panTro1\|chr2 (100231162-100232051)
	14-417, gnl\|rheMac2\|chr2 (18244028-18244905)
	14-417, gnl\|rn3\|chr11 (41618799-41619673)