Non-Coding RNA Search

Pig2-18A05

Sequence:


               
               GGTGATTTTGAGTTTAGGGGACCAGACCGTCCTCTGCCGGATCACCCTGTCGGATGACCC
CTTGCCTGGTGCCTCCTTCACCCTGAACGTCACCGTCCTGGTTAACGGGCTACCTAGCGA
GTGTCTGGGGAACTGCACCCTCTCCCTGTGTGAAGAGACAACCCCTGTCCTGGACGCCTG
GACCGTGAACATCAGTGGGTCTCTGACCACAGTGCTGATTAGGGGTCAGAGGTTAGGCAT
CACAGCCAAAGCGCCAGTGGTGTTGGTGGATGATCTCCTGCTTTGCACTGTAACTTTCTT
TAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGATTTTGAGTTTAGGGGACCAGACCGTCCTCTGCCGGATCACCCTGTCGGATGACCC
CTTGCCTGGTGCCTCCTTCACCCTGAACGTCACCGTCCTGGTTAACGGGCTACCTAGCGA
GTGTCTGGGGAACTGCACCCTCTCCCTGTGTGAAGAGACAACCCCTGTCCTGGACGCCTG
GACCGTGAACATCAGTGGGTCTCTGACCACAGTGCTGATTAGGGGTCAGAGGTTAGGCAT
CACAGCCAAAGCGCCAGTGGTGTTGGTGGATGATCTCCTGCTTTGCACTGTAACTTTCTT
TAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-280, + strand, RNAz p=0.977293

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-280, + strand, RNAz p=0.977293

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY074797, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY074797, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-304, gnl|bosTau2|chr23 (21323833-21324135)
               

               
               2-304, gnl|canFam2|chr12 (22674727-22676070)
               

               
               2-304, gnl|dasNov1|scaffold_13044 (16512-17855)
               

               
               2-304, gnl|echTel1|scaffold_235796 (2522-3859)
               

               
               2-304, gnl|galGal2|chr3 (105533924-105532569)
               

               
               2-304, gnl|hg17|chr6 (51997327-51998670)
               

               
               2-304, gnl|Hg17|chr6 (51998273-51997971)
               

               
               2-304, gnl|loxAfr1|scaffold_5058 (51392-52735)
               

               
               2-304, gnl|mm7|chr1 (20714995-20716338)
               

               
               2-304, gnl|Mm7|chr1 (20715941-20715639)
               

               
               2-304, gnl|monDom2|scaffold_0 (185502780-185501437)
               

               
               2-304, gnl|oryCun1|scaffold_211235 (318847-317502)
               

               
               2-304, gnl|panTro1|chr5 (53004476-53005819)
               

               
               2-304, gnl|rheMac2|chr4 (51688669-51690012)
               

               
               2-304, gnl|xenTro1|scaffold_55 (1768513-1769835)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-304, gnl|bosTau2|chr23 (21323833-21324135)
               

               
               2-304, gnl|canFam2|chr12 (22674727-22676070)
               

               
               2-304, gnl|dasNov1|scaffold_13044 (16512-17855)
               

               
               2-304, gnl|echTel1|scaffold_235796 (2522-3859)
               

               
               2-304, gnl|galGal2|chr3 (105533924-105532569)
               

               
               2-304, gnl|hg17|chr6 (51997327-51998670)
               

               
               2-304, gnl|Hg17|chr6 (51998273-51997971)
               

               
               2-304, gnl|loxAfr1|scaffold_5058 (51392-52735)
               

               
               2-304, gnl|mm7|chr1 (20714995-20716338)
               

               
               2-304, gnl|Mm7|chr1 (20715941-20715639)
               

               
               2-304, gnl|monDom2|scaffold_0 (185502780-185501437)
               

               
               2-304, gnl|oryCun1|scaffold_211235 (318847-317502)
               

               
               2-304, gnl|panTro1|chr5 (53004476-53005819)
               

               
               2-304, gnl|rheMac2|chr4 (51688669-51690012)
               

               
               2-304, gnl|xenTro1|scaffold_55 (1768513-1769835)

	2-304, gnl\|bosTau2\|chr23 (21323833-21324135)
	2-304, gnl\|canFam2\|chr12 (22674727-22676070)
	2-304, gnl\|dasNov1\|scaffold_13044 (16512-17855)
	2-304, gnl\|echTel1\|scaffold_235796 (2522-3859)
	2-304, gnl\|galGal2\|chr3 (105533924-105532569)
	2-304, gnl\|hg17\|chr6 (51997327-51998670)
	2-304, gnl\|Hg17\|chr6 (51998273-51997971)
	2-304, gnl\|loxAfr1\|scaffold_5058 (51392-52735)
	2-304, gnl\|mm7\|chr1 (20714995-20716338)
	2-304, gnl\|Mm7\|chr1 (20715941-20715639)
	2-304, gnl\|monDom2\|scaffold_0 (185502780-185501437)
	2-304, gnl\|oryCun1\|scaffold_211235 (318847-317502)
	2-304, gnl\|panTro1\|chr5 (53004476-53005819)
	2-304, gnl\|rheMac2\|chr4 (51688669-51690012)
	2-304, gnl\|xenTro1\|scaffold_55 (1768513-1769835)