Pig2-18F05a
|
GGTTTGTTTTTTTAAAAAAAATCTGCTAAGACTTTGACTGTACAATCACAATGGATAAGT
TTCTGCTCATCTTTTCTCTCATTCTAGTGGGACAAAGCCTTGTCAGTTGCCCCAGGGGTC
TCTGTGAAATACTGGAAGAAGTTGATGCAGAGGAGAGCAGATCAGTTAATCCAGGAAGAT
AAGGATGATGTCATTCCATACTGCATAGCCATTGGTGATGTGAAAAAATTAGTCAATTTT
TTTATGTTGAGAGGCCAGCTTAAAGAAGCCCTGCTTGTTGCACAGGCGGCCTGTGAGGGA
AATATGCAAACCTTCCATGTTCCTACACCTAAAGGATCTTCACATTCTGATGATATCTAC
AAGGAAGACTTTAATGAACTCCTGCAGGAAGCCTGTAAAGAGCTGGCAGAATGGTATTTT
CAGGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTTTGTTTTTTTAAAAAAAATCTGCTAAGACTTTGACTGTACAATCACAATGGATAAGT
TTCTGCTCATCTTTTCTCTCATTCTAGTGGGACAAAGCCTTGTCAGTTGCCCCAGGGGTC
TCTGTGAAATACTGGAAGAAGTTGATGCAGAGGAGAGCAGATCAGTTAATCCAGGAAGAT
AAGGATGATGTCATTCCATACTGCATAGCCATTGGTGATGTGAAAAAATTAGTCAATTTT
TTTATGTTGAGAGGCCAGCTTAAAGAAGCCCTGCTTGTTGCACAGGCGGCCTGTGAGGGA
AATATGCAAACCTTCCATGTTCCTACACCTAAAGGATCTTCACATTCTGATGATATCTAC
AAGGAAGACTTTAATGAACTCCTGCAGGAAGCCTGTAAAGAGCTGGCAGAATGGTATTTT
CAGGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
151-286, gnl|bosTau2|chr27 (2106819-2106954) |
|
151-286, gnl|canFam2|chr16 (56357639-56357483) |
|
151-286, gnl|danRer3|chr1 (35688749-35688599) |
|
151-286, gnl|dasNov1|scaffold_100007 (9467-9620) |
|
151-286, gnl|echTel1|scaffold_304648 (1606-1762) |
|
151-286, gnl|fr1|chrUn (96407553-96407399) |
|
151-286, gnl|galGal2|chr4 (44920919-44921071) |
|
151-286, gnl|hg17|chr4 (177456286-177456442) |
|
151-286, gnl|Hg17|chr4 (177456292-177456427) |
|
151-286, gnl|loxAfr1|scaffold_14260 (578-734) |
|
151-286, gnl|mm7|chr8 (53422952-53422796) |
|
151-286, gnl|Mm7|chr8 (53422944-53422809) |
|
151-286, gnl|monDom2|scaffold_9 (55632805-55632957) |
|
151-286, gnl|oryCun1|scaffold_192319 (8258-8126) |
|
151-286, gnl|panTro1|chr3 (195412870-195413026) |
|
151-286, gnl|rheMac2|chr5 (168240054-168240210) |
|
151-286, gnl|tetNig1|chrUn_random (166536554-166536690) |
|
151-286, gnl|xenTro1|scaffold_25 (512967-512826) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
151-286, gnl|bosTau2|chr27 (2106819-2106954) |
|
151-286, gnl|canFam2|chr16 (56357639-56357483) |
|
151-286, gnl|danRer3|chr1 (35688749-35688599) |
|
151-286, gnl|dasNov1|scaffold_100007 (9467-9620) |
|
151-286, gnl|echTel1|scaffold_304648 (1606-1762) |
|
151-286, gnl|fr1|chrUn (96407553-96407399) |
|
151-286, gnl|galGal2|chr4 (44920919-44921071) |
|
151-286, gnl|hg17|chr4 (177456286-177456442) |
|
151-286, gnl|Hg17|chr4 (177456292-177456427) |
|
151-286, gnl|loxAfr1|scaffold_14260 (578-734) |
|
151-286, gnl|mm7|chr8 (53422952-53422796) |
|
151-286, gnl|Mm7|chr8 (53422944-53422809) |
|
151-286, gnl|monDom2|scaffold_9 (55632805-55632957) |
|
151-286, gnl|oryCun1|scaffold_192319 (8258-8126) |
|
151-286, gnl|panTro1|chr3 (195412870-195413026) |
|
151-286, gnl|rheMac2|chr5 (168240054-168240210) |
|
151-286, gnl|tetNig1|chrUn_random (166536554-166536690) |
|
151-286, gnl|xenTro1|scaffold_25 (512967-512826) |
