Non-Coding RNA Search

Pig2-1L07

Sequence:


               
               AGAATATCTTCCAGAGCTTCCAAGCCTGCCTCTGCCAACACCCCTGAGCAAGCAGATGGT
GGTGGCAGCAATGGATTTGTAGCTGTTAACCTGAGCTCCTGCAAGCAGGAGGTTGATTCC
AAAGAATGGGTGATTGTGGATAAGGAACAGGACCTTCGGGATTTTAGGACAAATGAGGCT
TTAGGTCATAAGACAACTGGAAGCCCTTCTGATGAGGAGCCTGAAGTACTTCAAGTCCTG
GAGGAATCGCCTCAAGATGACAAACTCCGATTAGGTCCTTGGGCAGAAAATGATCATTTA
AAGAAGGAAACCTCAGGTGTGATCTTAGCACTTTCTAGAGAGTGCCCAGCCACTGCTGCT
TCAGAACAATACACAGATAGGCTGGAACTCCAGGCTGGAGCTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATATCTTCCAGAGCTTCCAAGCCTGCCTCTGCCAACACCCCTGAGCAAGCAGATGGT
GGTGGCAGCAATGGATTTGTAGCTGTTAACCTGAGCTCCTGCAAGCAGGAGGTTGATTCC
AAAGAATGGGTGATTGTGGATAAGGAACAGGACCTTCGGGATTTTAGGACAAATGAGGCT
TTAGGTCATAAGACAACTGGAAGCCCTTCTGATGAGGAGCCTGAAGTACTTCAAGTCCTG
GAGGAATCGCCTCAAGATGACAAACTCCGATTAGGTCCTTGGGCAGAAAATGATCATTTA
AAGAAGGAAACCTCAGGTGTGATCTTAGCACTTTCTAGAGAGTGCCCAGCCACTGCTGCT
TCAGAACAATACACAGATAGGCTGGAACTCCAGGCTGGAGCTGCTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-118, - strand, RNAz p=0.565573
               

               
               94-228, + strand, RNAz p=0.986508
               

               
               159-318, - strand, RNAz p=0.942699

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.565573
               

               
               94-228, + strand, RNAz p=0.986508
               

               
               159-318, - strand, RNAz p=0.942699

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               198-330, - strand, RNAmicro p=0.955336

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               198-330, - strand, RNAmicro p=0.955336

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-405, gnl|bosTau2|chr26 (30130519-30130924)
               

               
               1-405, gnl|canFam2|chr30 (12684486-12684975)
               

               
               1-405, gnl|danRer3|chr17 (42652658-42653112)
               

               
               1-405, gnl|dasNov1|scaffold_6445 (13025-12545)
               

               
               1-405, gnl|echTel1|scaffold_311375 (55844-55353)
               

               
               1-405, gnl|fr1|chrUn (130534649-130535087)
               

               
               1-405, gnl|galGal2|chr5 (23157908-23158400)
               

               
               1-405, gnl|hg17|chr15 (40854641-40855130)
               

               
               1-405, gnl|Hg17|chr15 (40855096-40854691)
               

               
               1-405, gnl|loxAfr1|scaffold_13100 (9945-9456)
               

               
               1-405, gnl|mm7|chr2 (120489300-120489789)
               

               
               1-405, gnl|Mm7|chr2 (120489755-120489350)
               

               
               1-405, gnl|monDom2|scaffold_53 (11669055-11668574)
               

               
               1-405, gnl|panTro1|chr16 (40839953-40840442)
               

               
               1-405, gnl|rheMac2|chr7 (21244594-21245083)
               

               
               1-405, gnl|rn3|chr3 (107423328-107423817)
               

               
               1-405, gnl|tetNig1|chr10 (10429709-10430130)
               

               
               1-405, gnl|xenTro1|scaffold_799 (234018-233553)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-405, gnl|bosTau2|chr26 (30130519-30130924)
               

               
               1-405, gnl|canFam2|chr30 (12684486-12684975)
               

               
               1-405, gnl|danRer3|chr17 (42652658-42653112)
               

               
               1-405, gnl|dasNov1|scaffold_6445 (13025-12545)
               

               
               1-405, gnl|echTel1|scaffold_311375 (55844-55353)
               

               
               1-405, gnl|fr1|chrUn (130534649-130535087)
               

               
               1-405, gnl|galGal2|chr5 (23157908-23158400)
               

               
               1-405, gnl|hg17|chr15 (40854641-40855130)
               

               
               1-405, gnl|Hg17|chr15 (40855096-40854691)
               

               
               1-405, gnl|loxAfr1|scaffold_13100 (9945-9456)
               

               
               1-405, gnl|mm7|chr2 (120489300-120489789)
               

               
               1-405, gnl|Mm7|chr2 (120489755-120489350)
               

               
               1-405, gnl|monDom2|scaffold_53 (11669055-11668574)
               

               
               1-405, gnl|panTro1|chr16 (40839953-40840442)
               

               
               1-405, gnl|rheMac2|chr7 (21244594-21245083)
               

               
               1-405, gnl|rn3|chr3 (107423328-107423817)
               

               
               1-405, gnl|tetNig1|chr10 (10429709-10430130)
               

               
               1-405, gnl|xenTro1|scaffold_799 (234018-233553)

	1-118, - strand, RNAz p=0.565573
	94-228, + strand, RNAz p=0.986508
	159-318, - strand, RNAz p=0.942699

	1-405, gnl\|bosTau2\|chr26 (30130519-30130924)
	1-405, gnl\|canFam2\|chr30 (12684486-12684975)
	1-405, gnl\|danRer3\|chr17 (42652658-42653112)
	1-405, gnl\|dasNov1\|scaffold_6445 (13025-12545)
	1-405, gnl\|echTel1\|scaffold_311375 (55844-55353)
	1-405, gnl\|fr1\|chrUn (130534649-130535087)
	1-405, gnl\|galGal2\|chr5 (23157908-23158400)
	1-405, gnl\|hg17\|chr15 (40854641-40855130)
	1-405, gnl\|Hg17\|chr15 (40855096-40854691)
	1-405, gnl\|loxAfr1\|scaffold_13100 (9945-9456)
	1-405, gnl\|mm7\|chr2 (120489300-120489789)
	1-405, gnl\|Mm7\|chr2 (120489755-120489350)
	1-405, gnl\|monDom2\|scaffold_53 (11669055-11668574)
	1-405, gnl\|panTro1\|chr16 (40839953-40840442)
	1-405, gnl\|rheMac2\|chr7 (21244594-21245083)
	1-405, gnl\|rn3\|chr3 (107423328-107423817)
	1-405, gnl\|tetNig1\|chr10 (10429709-10430130)
	1-405, gnl\|xenTro1\|scaffold_799 (234018-233553)