Non-Coding RNA Search

Pig2-1M24

Sequence:


               
               cacagagtcggacacgactgaagtgacttatcagcagcagcAGCAGTGCCAACTCTAACC
CACCTCCCACCGTCTGGATGATAGAGGTGCTTTGTGTTATGTGGGGCCGGATATGAGGGT
CGTGGGTCCAGGGGCTGCATGGAGCTCAGCCCTGGCCAGCCAGGGTTTCCTGGGTGCTGG
AAGGCCCTGGAGGACAGAGCTGTCGCTGAGCCTGCCAGGAGCCCAAACCCTGGCCGTGGA
GGCGTCGAGGATCCGCGTGCCTGGCTGGGGTCCCCGAGTGCAATCCCCTGCGCCCAGGCC
ACTGCTGACCGTGAATAAAGAGCTGCCTGGGGCCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               cacagagtcggacacgactgaagtgacttatcagcagcagcAGCAGTGCCAACTCTAACC
CACCTCCCACCGTCTGGATGATAGAGGTGCTTTGTGTTATGTGGGGCCGGATATGAGGGT
CGTGGGTCCAGGGGCTGCATGGAGCTCAGCCCTGGCCAGCCAGGGTTTCCTGGGTGCTGG
AAGGCCCTGGAGGACAGAGCTGTCGCTGAGCCTGCCAGGAGCCCAAACCCTGGCCGTGGA
GGCGTCGAGGATCCGCGTGCCTGGCTGGGGTCCCCGAGTGCAATCCCCTGCGCCCAGGCC
ACTGCTGACCGTGAATAAAGAGCTGCCTGGGGCCAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-251, - strand, RNAz p=0.949235

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-251, - strand, RNAz p=0.949235

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               1-338, gnl|bosTau2|chr7 (16317513-16317175)
               

               
               1-338, gnl|canFam2|chr20 (58928300-58927940)
               

               
               1-338, gnl|dasNov1|scaffold_269430 (374-745)
               

               
               1-338, gnl|hg17|chr19 (3495119-3495641)
               

               
               1-338, gnl|monDom2|scaffold_122 (1259123-1258608)
               

               
               1-338, gnl|panTro1|chr20 (3721312-3721836)
               

               
               1-338, gnl|rheMac2|chr19 (3381977-3382502)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-338, gnl|bosTau2|chr7 (16317513-16317175)
               

               
               1-338, gnl|canFam2|chr20 (58928300-58927940)
               

               
               1-338, gnl|dasNov1|scaffold_269430 (374-745)
               

               
               1-338, gnl|hg17|chr19 (3495119-3495641)
               

               
               1-338, gnl|monDom2|scaffold_122 (1259123-1258608)
               

               
               1-338, gnl|panTro1|chr20 (3721312-3721836)
               

               
               1-338, gnl|rheMac2|chr19 (3381977-3382502)

	1-338, gnl\|bosTau2\|chr7 (16317513-16317175)
	1-338, gnl\|canFam2\|chr20 (58928300-58927940)
	1-338, gnl\|dasNov1\|scaffold_269430 (374-745)
	1-338, gnl\|hg17\|chr19 (3495119-3495641)
	1-338, gnl\|monDom2\|scaffold_122 (1259123-1258608)
	1-338, gnl\|panTro1\|chr20 (3721312-3721836)
	1-338, gnl\|rheMac2\|chr19 (3381977-3382502)