Non-Coding RNA Search

Pig2-21C20

Sequence:


               
               GTCCCCTCCCACACACATTCCAGAAGTCAGGGCCCCTCCAGGAGCGCCCGCTGCAGGGCT
GCAGGGCTGTAGGGCTGCAGGGCTGCAGGGCTGCAGGGCTCCGTGCTCTCCCGAGGCAGG
GTCTGGGGTCACCCCTGCCCCCATCATAACTCCCCACGTCCCTTGAGTTCTCATTTATTT
TTTTTCCATTTTTTTTCCTCTCAAAGGTGGTTTTTGGGGGGATACGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCCTCCCACACACATTCCAGAAGTCAGGGCCCCTCCAGGAGCGCCCGCTGCAGGGCT
GCAGGGCTGTAGGGCTGCAGGGCTGCAGGGCTGCAGGGCTCCGTGCTCTCCCGAGGCAGG
GTCTGGGGTCACCCCTGCCCCCATCATAACTCCCCACGTCCCTTGAGTTCTCATTTATTT
TTTTTCCATTTTTTTTCCTCTCAAAGGTGGTTTTTGGGGGGATACGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               84-228, - strand, RNAz p=0.975525
               

               
               97-209, - strand, RNAz p=0.872314

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-228, - strand, RNAz p=0.975525
               

               
               97-209, - strand, RNAz p=0.872314

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               84-228, gnl|bosTau2|chr19 (20452600-20452460)
               

               
               84-228, gnl|canFam2|chr5 (35161964-35162200)
               

               
               84-228, gnl|dasNov1|scaffold_39568 (4818-4601)
               

               
               84-228, gnl|hg17|chr17 (7034122-7034337)
               

               
               84-228, gnl|Hg17|chr17 (7034374-7034224)
               

               
               84-228, gnl|loxAfr1|scaffold_21816 (7015-6784)
               

               
               84-228, gnl|mm7|chr11 (70126894-70126683)
               

               
               84-228, gnl|Mm7|chr11 (70126652-70126792)
               

               
               84-228, gnl|monDom2|scaffold_66 (4076864-4077091)
               

               
               84-228, gnl|panTro1|chr19_random (44719473-44719261)
               

               
               84-228, gnl|rheMac2|chr16 (6917557-6917772)
               

               
               84-228, gnl|rn3|chr10 (56904037-56903826)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-228, gnl|bosTau2|chr19 (20452600-20452460)
               

               
               84-228, gnl|canFam2|chr5 (35161964-35162200)
               

               
               84-228, gnl|dasNov1|scaffold_39568 (4818-4601)
               

               
               84-228, gnl|hg17|chr17 (7034122-7034337)
               

               
               84-228, gnl|Hg17|chr17 (7034374-7034224)
               

               
               84-228, gnl|loxAfr1|scaffold_21816 (7015-6784)
               

               
               84-228, gnl|mm7|chr11 (70126894-70126683)
               

               
               84-228, gnl|Mm7|chr11 (70126652-70126792)
               

               
               84-228, gnl|monDom2|scaffold_66 (4076864-4077091)
               

               
               84-228, gnl|panTro1|chr19_random (44719473-44719261)
               

               
               84-228, gnl|rheMac2|chr16 (6917557-6917772)
               

               
               84-228, gnl|rn3|chr10 (56904037-56903826)

	84-228, - strand, RNAz p=0.975525
	97-209, - strand, RNAz p=0.872314

	84-228, gnl\|bosTau2\|chr19 (20452600-20452460)
	84-228, gnl\|canFam2\|chr5 (35161964-35162200)
	84-228, gnl\|dasNov1\|scaffold_39568 (4818-4601)
	84-228, gnl\|hg17\|chr17 (7034122-7034337)
	84-228, gnl\|Hg17\|chr17 (7034374-7034224)
	84-228, gnl\|loxAfr1\|scaffold_21816 (7015-6784)
	84-228, gnl\|mm7\|chr11 (70126894-70126683)
	84-228, gnl\|Mm7\|chr11 (70126652-70126792)
	84-228, gnl\|monDom2\|scaffold_66 (4076864-4077091)
	84-228, gnl\|panTro1\|chr19_random (44719473-44719261)
	84-228, gnl\|rheMac2\|chr16 (6917557-6917772)
	84-228, gnl\|rn3\|chr10 (56904037-56903826)