Non-Coding RNA Search

Pig2-21P01

Sequence:


               
               GCCCACGCGTCCGGCTGTGGTCTCCATGGTGCTAGGCCAGGGCGGCCCGCCCTGCCAGGA
GGCCTGGCCTGGGCATGCACGGTCGGCTGGGGCCAAGCTCGTCCCAGGCCCGTAGGAGGA
CATGGGCCGTGCGACACATGCCCTCCCAGCCCTGCCTCACGTCCTAGAGTCTACAGAGCT
CCAGCTTGTCGTGGCAGCTGGCAGGACAACCAGCCCTGGGAAGACAGAGGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGGCTGTGGTCTCCATGGTGCTAGGCCAGGGCGGCCCGCCCTGCCAGGA
GGCCTGGCCTGGGCATGCACGGTCGGCTGGGGCCAAGCTCGTCCCAGGCCCGTAGGAGGA
CATGGGCCGTGCGACACATGCCCTCCCAGCCCTGCCTCACGTCCTAGAGTCTACAGAGCT
CCAGCTTGTCGTGGCAGCTGGCAGGACAACCAGCCCTGGGAAGACAGAGGGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               54-152, - strand, RNAz p=0.990006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-152, - strand, RNAz p=0.990006

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               117-214, - strand, RNAmicro p=0.996503

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               117-214, - strand, RNAmicro p=0.996503

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               14-233, gnl|bosTau2|chr17 (27455519-27455298)
               

               
               14-233, gnl|canFam2|chr26 (9536457-9536197)
               

               
               14-233, gnl|echTel1|scaffold_317027 (166796-166924)
               

               
               14-233, gnl|hg17|chr12 (121995090-121995369)
               

               
               14-233, gnl|Hg17|chr12 (121995436-121995216)
               

               
               14-233, gnl|mm7|chr5 (123366730-123367004)
               

               
               14-233, gnl|Mm7|chr5 (123367091-123366856)
               

               
               14-233, gnl|monDom2|scaffold_97 (3413809-3414105)
               

               
               14-233, gnl|oryCun1|scaffold_195345 (19538-19802)
               

               
               14-233, gnl|panTro1|chr10 (125075256-125075535)
               

               
               14-233, gnl|rheMac2|chr11 (124253859-124254138)
               

               
               14-233, gnl|rn3|chr12 (33464437-33464163)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-233, gnl|bosTau2|chr17 (27455519-27455298)
               

               
               14-233, gnl|canFam2|chr26 (9536457-9536197)
               

               
               14-233, gnl|echTel1|scaffold_317027 (166796-166924)
               

               
               14-233, gnl|hg17|chr12 (121995090-121995369)
               

               
               14-233, gnl|Hg17|chr12 (121995436-121995216)
               

               
               14-233, gnl|mm7|chr5 (123366730-123367004)
               

               
               14-233, gnl|Mm7|chr5 (123367091-123366856)
               

               
               14-233, gnl|monDom2|scaffold_97 (3413809-3414105)
               

               
               14-233, gnl|oryCun1|scaffold_195345 (19538-19802)
               

               
               14-233, gnl|panTro1|chr10 (125075256-125075535)
               

               
               14-233, gnl|rheMac2|chr11 (124253859-124254138)
               

               
               14-233, gnl|rn3|chr12 (33464437-33464163)

	14-233, gnl\|bosTau2\|chr17 (27455519-27455298)
	14-233, gnl\|canFam2\|chr26 (9536457-9536197)
	14-233, gnl\|echTel1\|scaffold_317027 (166796-166924)
	14-233, gnl\|hg17\|chr12 (121995090-121995369)
	14-233, gnl\|Hg17\|chr12 (121995436-121995216)
	14-233, gnl\|mm7\|chr5 (123366730-123367004)
	14-233, gnl\|Mm7\|chr5 (123367091-123366856)
	14-233, gnl\|monDom2\|scaffold_97 (3413809-3414105)
	14-233, gnl\|oryCun1\|scaffold_195345 (19538-19802)
	14-233, gnl\|panTro1\|chr10 (125075256-125075535)
	14-233, gnl\|rheMac2\|chr11 (124253859-124254138)
	14-233, gnl\|rn3\|chr12 (33464437-33464163)