Non-Coding RNA Search

Pig2-22B05

Sequence:


               
               GGCGGGGAAGGTGCCGAGATTCCCCAGGTGACTCACAAGGATGCGCTCTGCAGGGTCAGC
CCTCTCGGTTTGAAGATGCGTGGGAAAAATCTGGCGAGAGGAGTCCGCCACCCACGCCAC
ATCTGAAAGGCAAATAGATGGTGAAACCTGTGGCCTGAAATGAGAAAACGGACTTTTTTT
GAGCAAGCGGTTGAAGCTGAAGCCATCAAAACCTAGGGGAGAGCAGAGCTGTTATGAAAG
CCGCTCAAAGTGGGTTGGGGTGAAAGAAAGGTCAGCCTTTTACTTTTCCCACACCCGCTG
GTTTCTGAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGGAAGGTGCCGAGATTCCCCAGGTGACTCACAAGGATGCGCTCTGCAGGGTCAGC
CCTCTCGGTTTGAAGATGCGTGGGAAAAATCTGGCGAGAGGAGTCCGCCACCCACGCCAC
ATCTGAAAGGCAAATAGATGGTGAAACCTGTGGCCTGAAATGAGAAAACGGACTTTTTTT
GAGCAAGCGGTTGAAGCTGAAGCCATCAAAACCTAGGGGAGAGCAGAGCTGTTATGAAAG
CCGCTCAAAGTGGGTTGGGGTGAAAGAAAGGTCAGCCTTTTACTTTTCCCACACCCGCTG
GTTTCTGAAGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               158-312, - strand, RNAz p=0.867328

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-312, - strand, RNAz p=0.867328

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               6-312, gnl|bosTau2|chr22 (42110209-42110516)
               

               
               6-312, gnl|canFam2|chr20 (45594841-45594207)
               

               
               6-312, gnl|dasNov1|scaffold_7365 (41954-42569)
               

               
               6-312, gnl|echTel1|scaffold_235730 (99-709)
               

               
               6-312, gnl|hg17|chr3 (45932298-45932936)
               

               
               6-312, gnl|Hg17|chr3 (45932646-45932336)
               

               
               6-312, gnl|panTro1|chr2 (47281223-47281862)
               

               
               6-312, gnl|rheMac2|chr2 (90613317-90612683)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-312, gnl|bosTau2|chr22 (42110209-42110516)
               

               
               6-312, gnl|canFam2|chr20 (45594841-45594207)
               

               
               6-312, gnl|dasNov1|scaffold_7365 (41954-42569)
               

               
               6-312, gnl|echTel1|scaffold_235730 (99-709)
               

               
               6-312, gnl|hg17|chr3 (45932298-45932936)
               

               
               6-312, gnl|Hg17|chr3 (45932646-45932336)
               

               
               6-312, gnl|panTro1|chr2 (47281223-47281862)
               

               
               6-312, gnl|rheMac2|chr2 (90613317-90612683)

	6-312, gnl\|bosTau2\|chr22 (42110209-42110516)
	6-312, gnl\|canFam2\|chr20 (45594841-45594207)
	6-312, gnl\|dasNov1\|scaffold_7365 (41954-42569)
	6-312, gnl\|echTel1\|scaffold_235730 (99-709)
	6-312, gnl\|hg17\|chr3 (45932298-45932936)
	6-312, gnl\|Hg17\|chr3 (45932646-45932336)
	6-312, gnl\|panTro1\|chr2 (47281223-47281862)
	6-312, gnl\|rheMac2\|chr2 (90613317-90612683)