Non-Coding RNA Search

Pig2-25E06

Sequence:


               
               GCTCTCACTGGGTCCTGGTGGGGGGTTCCCTTTTCCTGGGGTGATTGCCTGAGCCTGAGG
TCCTGGCTTTGACACAGACTCAAGGGCCAGGGATCCTGGTAGTGGAGACCAGCCAGGCTG
GGGTGCCCTTGCCAGCATTTTGCCTCTCCCACTGTCATGTATTTATTCCCGATTTATGTG
CCCTACTTCCTGGGGCTGGGAGGCAGCAGCTTCCAAAGGTTCGGTGCAAGGAACAGGGCT
CCTCTGGAAGGCACCGATTGTTCCTAGCTCTTTTCTTTTTGTTTGTTTGTTTGTTTGTTT
GTTTTTTAGGGCCACGCCGGCGGCATATGAAAGTTTCTAGGCTAGCAATTGAACTGTAGC
TGTAGCTGTGGCTTATGCCACAGCCACATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTCACTGGGTCCTGGTGGGGGGTTCCCTTTTCCTGGGGTGATTGCCTGAGCCTGAGG
TCCTGGCTTTGACACAGACTCAAGGGCCAGGGATCCTGGTAGTGGAGACCAGCCAGGCTG
GGGTGCCCTTGCCAGCATTTTGCCTCTCCCACTGTCATGTATTTATTCCCGATTTATGTG
CCCTACTTCCTGGGGCTGGGAGGCAGCAGCTTCCAAAGGTTCGGTGCAAGGAACAGGGCT
CCTCTGGAAGGCACCGATTGTTCCTAGCTCTTTTCTTTTTGTTTGTTTGTTTGTTTGTTT
GTTTTTTAGGGCCACGCCGGCGGCATATGAAAGTTTCTAGGCTAGCAATTGAACTGTAGC
TGTAGCTGTGGCTTATGCCACAGCCACATTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-116, - strand, RNAz p=0.783665
               

               
               26-172, - strand, RNAz p=0.857101

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-116, - strand, RNAz p=0.783665
               

               
               26-172, - strand, RNAz p=0.857101

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               2-268, gnl|bosTau2|chr18 (28360225-28359972)
               

               
               2-268, gnl|canFam2|chr5 (85197531-85197906)
               

               
               2-268, gnl|echTel1|scaffold_318276 (48500-48877)
               

               
               2-268, gnl|Hg17|chr16 (65767793-65767537)
               

               
               2-268, gnl|hg17|chr18 (10717245-10717620)
               

               
               2-268, gnl|mm7|chr8 (103880353-103879942)
               

               
               2-268, gnl|oryCun1|scaffold_200187 (14167-13799)
               

               
               2-268, gnl|panTro1|chr17_random (1347815-1348190)
               

               
               2-268, gnl|rheMac2|chr18 (2692603-2692973)
               

               
               2-268, gnl|rn3|chr19 (35101556-35101185)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-268, gnl|bosTau2|chr18 (28360225-28359972)
               

               
               2-268, gnl|canFam2|chr5 (85197531-85197906)
               

               
               2-268, gnl|echTel1|scaffold_318276 (48500-48877)
               

               
               2-268, gnl|Hg17|chr16 (65767793-65767537)
               

               
               2-268, gnl|hg17|chr18 (10717245-10717620)
               

               
               2-268, gnl|mm7|chr8 (103880353-103879942)
               

               
               2-268, gnl|oryCun1|scaffold_200187 (14167-13799)
               

               
               2-268, gnl|panTro1|chr17_random (1347815-1348190)
               

               
               2-268, gnl|rheMac2|chr18 (2692603-2692973)
               

               
               2-268, gnl|rn3|chr19 (35101556-35101185)

	2-116, - strand, RNAz p=0.783665
	26-172, - strand, RNAz p=0.857101

	2-268, gnl\|bosTau2\|chr18 (28360225-28359972)
	2-268, gnl\|canFam2\|chr5 (85197531-85197906)
	2-268, gnl\|echTel1\|scaffold_318276 (48500-48877)
	2-268, gnl\|Hg17\|chr16 (65767793-65767537)
	2-268, gnl\|hg17\|chr18 (10717245-10717620)
	2-268, gnl\|mm7\|chr8 (103880353-103879942)
	2-268, gnl\|oryCun1\|scaffold_200187 (14167-13799)
	2-268, gnl\|panTro1\|chr17_random (1347815-1348190)
	2-268, gnl\|rheMac2\|chr18 (2692603-2692973)
	2-268, gnl\|rn3\|chr19 (35101556-35101185)