Non-Coding RNA Search

Pig2-26K20

Sequence:


               
               GGGAAAAAACTAATGCCATGAAGTTCAAGGCAGATTTCCCATCAACTATTACTGCCCAGC
GGCAGGAACCTGGAAAGAAGAGGTCAAGGTACTGCTTGTCAGGAGGCAGTCCCCGGGAAA
GGCGCTGGTAAAGGCAAAGAGGAGAGTTGCCGGATGGAGAGGAGACAGAAAGGGAAAGGG
AAGGGAAGGCACTGGCACCCCAAGTCAGAGCGCAGAAAAACTCTCAGCAGCGGGAGCTGC
GCGCCGCTCAGGTGGCCTTTTCCCGCTCAGGTGAGCTCCTCCCGCGCCTCCCATTGGCTA
AGGCGCCCGTGGCGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAAAAACTAATGCCATGAAGTTCAAGGCAGATTTCCCATCAACTATTACTGCCCAGC
GGCAGGAACCTGGAAAGAAGAGGTCAAGGTACTGCTTGTCAGGAGGCAGTCCCCGGGAAA
GGCGCTGGTAAAGGCAAAGAGGAGAGTTGCCGGATGGAGAGGAGACAGAAAGGGAAAGGG
AAGGGAAGGCACTGGCACCCCAAGTCAGAGCGCAGAAAAACTCTCAGCAGCGGGAGCTGC
GCGCCGCTCAGGTGGCCTTTTCCCGCTCAGGTGAGCTCCTCCCGCGCCTCCCATTGGCTA
AGGCGCCCGTGGCGCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               45-155, + strand, RNAz p=0.68194

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-155, + strand, RNAz p=0.68194

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-167, gnl|bosTau2|chr5 (30314284-30314442)
               

               
               6-167, gnl|Hg17|chr12 (63849255-63849433)
               

               
               6-167, gnl|Mm7|chr10 (120375942-120375754)
               


               
               196-317, gnl|bosTau2|chr5 (30314441-30314563)
               

               
               196-317, gnl|dasNov1|scaffold_10488 (32551-32832)
               

               
               196-317, gnl|echTel1|scaffold_280973 (43864-43595)
               

               
               196-317, gnl|hg17|chr12 (63849264-63849541)
               

               
               196-317, gnl|Hg17|chr12 (63849432-63849554)
               

               
               196-317, gnl|mm7|chr10 (120375935-120375663)
               

               
               196-317, gnl|Mm7|chr10 (120375753-120375644)
               

               
               196-317, gnl|oryCun1|scaffold_172468 (14065-14337)
               

               
               196-317, gnl|panTro1|chr10 (65213549-65213827)
               

               
               196-317, gnl|rheMac2|chr11 (62217743-62218020)
               

               
               196-317, gnl|rn3|chr7 (60302519-60302294)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-167, gnl|bosTau2|chr5 (30314284-30314442)
               

               
               6-167, gnl|Hg17|chr12 (63849255-63849433)
               

               
               6-167, gnl|Mm7|chr10 (120375942-120375754)
               


               
               196-317, gnl|bosTau2|chr5 (30314441-30314563)
               

               
               196-317, gnl|dasNov1|scaffold_10488 (32551-32832)
               

               
               196-317, gnl|echTel1|scaffold_280973 (43864-43595)
               

               
               196-317, gnl|hg17|chr12 (63849264-63849541)
               

               
               196-317, gnl|Hg17|chr12 (63849432-63849554)
               

               
               196-317, gnl|mm7|chr10 (120375935-120375663)
               

               
               196-317, gnl|Mm7|chr10 (120375753-120375644)
               

               
               196-317, gnl|oryCun1|scaffold_172468 (14065-14337)
               

               
               196-317, gnl|panTro1|chr10 (65213549-65213827)
               

               
               196-317, gnl|rheMac2|chr11 (62217743-62218020)
               

               
               196-317, gnl|rn3|chr7 (60302519-60302294)

	6-167, gnl\|bosTau2\|chr5 (30314284-30314442)
	6-167, gnl\|Hg17\|chr12 (63849255-63849433)
	6-167, gnl\|Mm7\|chr10 (120375942-120375754)

	196-317, gnl\|bosTau2\|chr5 (30314441-30314563)
	196-317, gnl\|dasNov1\|scaffold_10488 (32551-32832)
	196-317, gnl\|echTel1\|scaffold_280973 (43864-43595)
	196-317, gnl\|hg17\|chr12 (63849264-63849541)
	196-317, gnl\|Hg17\|chr12 (63849432-63849554)
	196-317, gnl\|mm7\|chr10 (120375935-120375663)
	196-317, gnl\|Mm7\|chr10 (120375753-120375644)
	196-317, gnl\|oryCun1\|scaffold_172468 (14065-14337)
	196-317, gnl\|panTro1\|chr10 (65213549-65213827)
	196-317, gnl\|rheMac2\|chr11 (62217743-62218020)
	196-317, gnl\|rn3\|chr7 (60302519-60302294)