Non-Coding RNA Search

Pig2-27D17

Sequence:


               
               GCTTTCCTGGCACCCCACATCCAGAGCCTCCATACTGCACCCCTGAAATACCATCCTGAC
ATCTCCACCGTGACTCACAAGCTTGGGAGATCACTGGGCCCTGGGACCCATGCTGGGAGC
CCTCCACCAGCCCCTGCGGGCTCCTCCCTGCCAAACCCCCAGCACCCACCTGCTACCAGG
GTTTCAGTTTCTGTGAATCATCAAACCCGTTGTTCTTCTCTGGGGAGGGCAGGGCGGAGG
GAGTAGCTGTCAAGCGGCCAGGCAAACAGCTGTGTGGGCTGGCTTCCTTCTTCACCAGAG
GGGTGTGAGGAAAGGCCTGAACCTCGTAACCCCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTCCTGGCACCCCACATCCAGAGCCTCCATACTGCACCCCTGAAATACCATCCTGAC
ATCTCCACCGTGACTCACAAGCTTGGGAGATCACTGGGCCCTGGGACCCATGCTGGGAGC
CCTCCACCAGCCCCTGCGGGCTCCTCCCTGCCAAACCCCCAGCACCCACCTGCTACCAGG
GTTTCAGTTTCTGTGAATCATCAAACCCGTTGTTCTTCTCTGGGGAGGGCAGGGCGGAGG
GAGTAGCTGTCAAGCGGCCAGGCAAACAGCTGTGTGGGCTGGCTTCCTTCTTCACCAGAG
GGGTGTGAGGAAAGGCCTGAACCTCGTAACCCCACTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-337, + strand, RNAz p=0.937629

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-337, + strand, RNAz p=0.937629

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               216-329, + strand, RNAmicro p=0.939746

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               216-329, + strand, RNAmicro p=0.939746

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               99-337, gnl|bosTau2|chr29 (39705700-39705930)
               

               
               99-337, gnl|Hg17|chr11 (66992395-66992160)
               

               
               99-337, gnl|Mm7|chr19 (4021598-4021842)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-337, gnl|bosTau2|chr29 (39705700-39705930)
               

               
               99-337, gnl|Hg17|chr11 (66992395-66992160)
               

               
               99-337, gnl|Mm7|chr19 (4021598-4021842)

	99-337, gnl\|bosTau2\|chr29 (39705700-39705930)
	99-337, gnl\|Hg17\|chr11 (66992395-66992160)
	99-337, gnl\|Mm7\|chr19 (4021598-4021842)