Non-Coding RNA Search

Pig2-27K15

Sequence:


               
               GCACACTCCTGGGACTGACTTACTTCCTACCCTCACAGCCTCTCTGGATCCTGGGGGAGG
CCCCAGAGGAGTTCCCCTGAGGACCACCATCCCCCGGGTCACCTCTCAGAGGCTGCTGAG
GGTGCCCAGGCTGATGCCCCCCATCCAGAGCATGCCCACCACCCCGGAGGCTAGCGGAGC
CAAGGAGAATGGCCTGGACCCACCCCAGAGCAGTCAGGGTCCCCAGGGGCTGAGACCTGG
TGCCCAGGAGGTGAAGATCTCCCAGCAGTACCTGCACTGCAATGATGAGAAGATGCACAG
GTCCCTGGGGGGCATCGTGATCCCGCCCATCCCAAAGGCCGGGGTGCCCGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACACTCCTGGGACTGACTTACTTCCTACCCTCACAGCCTCTCTGGATCCTGGGGGAGG
CCCCAGAGGAGTTCCCCTGAGGACCACCATCCCCCGGGTCACCTCTCAGAGGCTGCTGAG
GGTGCCCAGGCTGATGCCCCCCATCCAGAGCATGCCCACCACCCCGGAGGCTAGCGGAGC
CAAGGAGAATGGCCTGGACCCACCCCAGAGCAGTCAGGGTCCCCAGGGGCTGAGACCTGG
TGCCCAGGAGGTGAAGATCTCCCAGCAGTACCTGCACTGCAATGATGAGAAGATGCACAG
GTCCCTGGGGGGCATCGTGATCCCGCCCATCCCAAAGGCCGGGGTGCCCGCCG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-143, - strand, RNAz p=0.795318
               

               
               36-152, - strand, RNAz p=0.981929

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-143, - strand, RNAz p=0.795318
               

               
               36-152, - strand, RNAz p=0.981929

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               22-239, - strand, RNAmicro p=0.999948
               

               
               27-138, + strand, RNAmicro p=0.986048

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               22-239, - strand, RNAmicro p=0.999948
               

               
               27-138, + strand, RNAmicro p=0.986048

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-252, gnl|bosTau2|chr11 (50390756-50391013)
               

               
               2-252, gnl|canFam2|chr17 (25959233-25959610)
               

               
               2-252, gnl|dasNov1|scaffold_157578 (1194-840)
               

               
               2-252, gnl|hg17|chr2 (29136910-29137311)
               

               
               2-252, gnl|Hg17|chr2 (29137008-29137266)
               

               
               2-252, gnl|mm7|chr17 (69971744-69972132)
               

               
               2-252, gnl|Mm7|chr17 (69971855-69972113)
               

               
               2-252, gnl|monDom2|scaffold_1 (146611884-146611453)
               

               
               2-252, gnl|oryCun1|scaffold_34553 (18-375)
               

               
               2-252, gnl|panTro1|chr12 (30097192-30097593)
               

               
               2-252, gnl|rheMac2|chr13 (28997757-28998157)
               

               
               2-252, gnl|rn3|chr6 (23919436-23919034)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-252, gnl|bosTau2|chr11 (50390756-50391013)
               

               
               2-252, gnl|canFam2|chr17 (25959233-25959610)
               

               
               2-252, gnl|dasNov1|scaffold_157578 (1194-840)
               

               
               2-252, gnl|hg17|chr2 (29136910-29137311)
               

               
               2-252, gnl|Hg17|chr2 (29137008-29137266)
               

               
               2-252, gnl|mm7|chr17 (69971744-69972132)
               

               
               2-252, gnl|Mm7|chr17 (69971855-69972113)
               

               
               2-252, gnl|monDom2|scaffold_1 (146611884-146611453)
               

               
               2-252, gnl|oryCun1|scaffold_34553 (18-375)
               

               
               2-252, gnl|panTro1|chr12 (30097192-30097593)
               

               
               2-252, gnl|rheMac2|chr13 (28997757-28998157)
               

               
               2-252, gnl|rn3|chr6 (23919436-23919034)

	5-143, - strand, RNAz p=0.795318
	36-152, - strand, RNAz p=0.981929

	22-239, - strand, RNAmicro p=0.999948
	27-138, + strand, RNAmicro p=0.986048

	2-252, gnl\|bosTau2\|chr11 (50390756-50391013)
	2-252, gnl\|canFam2\|chr17 (25959233-25959610)
	2-252, gnl\|dasNov1\|scaffold_157578 (1194-840)
	2-252, gnl\|hg17\|chr2 (29136910-29137311)
	2-252, gnl\|Hg17\|chr2 (29137008-29137266)
	2-252, gnl\|mm7\|chr17 (69971744-69972132)
	2-252, gnl\|Mm7\|chr17 (69971855-69972113)
	2-252, gnl\|monDom2\|scaffold_1 (146611884-146611453)
	2-252, gnl\|oryCun1\|scaffold_34553 (18-375)
	2-252, gnl\|panTro1\|chr12 (30097192-30097593)
	2-252, gnl\|rheMac2\|chr13 (28997757-28998157)
	2-252, gnl\|rn3\|chr6 (23919436-23919034)