Non-Coding RNA Search

Pig2-27N19

Sequence:


               
               GGGGCTAGGCTTTTTCAATGTAATGAAGCACGGTTTTCCTCCCATTTGTAGTGGCAGATC
ATCTCCAAGTGAGTTTTCCCAGGAAGGTGTATCAGTGCTGCTTTTCCTGTGACCAAGTCA
GGAATTACCGACGTGCTAACAATGACCAACTGATTAGCAAATCAAGCCCAGAAGTCAGTT
CCCCGGTGTCTAATCCATTGCAGAGCCAGCATTCCCATTTCTTTCGGAGGCCAAGGCCAT
TTTCTTTCCCACATGTACTCTTGGACCATAGCTCTAGGAACCAAATGGTGGAGAGCAAGA
TGCTTCCCAATGTCGAAAGATTCAGGAAGCTCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCTAGGCTTTTTCAATGTAATGAAGCACGGTTTTCCTCCCATTTGTAGTGGCAGATC
ATCTCCAAGTGAGTTTTCCCAGGAAGGTGTATCAGTGCTGCTTTTCCTGTGACCAAGTCA
GGAATTACCGACGTGCTAACAATGACCAACTGATTAGCAAATCAAGCCCAGAAGTCAGTT
CCCCGGTGTCTAATCCATTGCAGAGCCAGCATTCCCATTTCTTTCGGAGGCCAAGGCCAT
TTTCTTTCCCACATGTACTCTTGGACCATAGCTCTAGGAACCAAATGGTGGAGAGCAAGA
TGCTTCCCAATGTCGAAAGATTCAGGAAGCTCCCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               219-334, - strand, RNAz p=0.531209
               

               
               225-334, - strand, RNAz p=0.681396

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-334, - strand, RNAz p=0.531209
               

               
               225-334, - strand, RNAz p=0.681396

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               2-334, gnl|bosTau2|chrX (17657899-17658243)
               

               
               2-334, gnl|canFam2|chrX (84752292-84752855)
               

               
               2-334, gnl|dasNov1|scaffold_4416 (46218-46829)
               

               
               2-334, gnl|hg17|chrX (107198774-107199386)
               

               
               2-334, gnl|Hg17|chrX (107198800-107199161)
               

               
               2-334, gnl|loxAfr1|scaffold_85 (42271-42893)
               

               
               2-334, gnl|mm7|chrX (135822155-135822891)
               

               
               2-334, gnl|Mm7|chrX (135822181-135822674)
               

               
               2-334, gnl|oryCun1|scaffold_198946 (38800-39406)
               

               
               2-334, gnl|panTro1|chrX (110794863-110795476)
               

               
               2-334, gnl|rheMac2|chrX (106875738-106876349)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-334, gnl|bosTau2|chrX (17657899-17658243)
               

               
               2-334, gnl|canFam2|chrX (84752292-84752855)
               

               
               2-334, gnl|dasNov1|scaffold_4416 (46218-46829)
               

               
               2-334, gnl|hg17|chrX (107198774-107199386)
               

               
               2-334, gnl|Hg17|chrX (107198800-107199161)
               

               
               2-334, gnl|loxAfr1|scaffold_85 (42271-42893)
               

               
               2-334, gnl|mm7|chrX (135822155-135822891)
               

               
               2-334, gnl|Mm7|chrX (135822181-135822674)
               

               
               2-334, gnl|oryCun1|scaffold_198946 (38800-39406)
               

               
               2-334, gnl|panTro1|chrX (110794863-110795476)
               

               
               2-334, gnl|rheMac2|chrX (106875738-106876349)

	219-334, - strand, RNAz p=0.531209
	225-334, - strand, RNAz p=0.681396

	2-334, gnl\|bosTau2\|chrX (17657899-17658243)
	2-334, gnl\|canFam2\|chrX (84752292-84752855)
	2-334, gnl\|dasNov1\|scaffold_4416 (46218-46829)
	2-334, gnl\|hg17\|chrX (107198774-107199386)
	2-334, gnl\|Hg17\|chrX (107198800-107199161)
	2-334, gnl\|loxAfr1\|scaffold_85 (42271-42893)
	2-334, gnl\|mm7\|chrX (135822155-135822891)
	2-334, gnl\|Mm7\|chrX (135822181-135822674)
	2-334, gnl\|oryCun1\|scaffold_198946 (38800-39406)
	2-334, gnl\|panTro1\|chrX (110794863-110795476)
	2-334, gnl\|rheMac2\|chrX (106875738-106876349)