Non-Coding RNA Search

Pig2-28A21

Sequence:


               
               GCAGGCCCGGGTCCTGGCCCAGGCCACCTCGGACCTCGTCAACGCCATGAGGTCAGATGC
GGAAGCAGAAATTGACATGGAGAATTCCAAGAAGCTTCTGGCAGCAGCAAAACTCTTGGC
TGACTCCACGGCTCGCATGGTGGAGGCTGCAAAGGGGGCCGCAGCCAACCCCGAGAACGA
GGACCAGCAGCAAAGACTGAGAGAAGCTGCAGAAGGTCTTCGGGTGGCAACCAATGCTGC
AGCCCTAGAAAAGACAAAAAGAGACCANNNNAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCCCGGGTCCTGGCCCAGGCCACCTCGGACCTCGTCAACGCCATGAGGTCAGATGC
GGAAGCAGAAATTGACATGGAGAATTCCAAGAAGCTTCTGGCAGCAGCAAAACTCTTGGC
TGACTCCACGGCTCGCATGGTGGAGGCTGCAAAGGGGGCCGCAGCCAACCCCGAGAACGA
GGACCAGCAGCAAAGACTGAGAGAAGCTGCAGAAGGTCTTCGGGTGGCAACCAATGCTGC
AGCCCTAGAAAAGACAAAAAGAGACCANNNNAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-120, + strand, RNAz p=0.632777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.632777

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               2-155, gnl|bosTau2|chr10 (33312120-33311967)
               

               
               2-155, gnl|canFam2|chr30 (30308127-30308324)
               

               
               2-155, gnl|danRer3|chr13 (38005338-38005520)
               

               
               2-155, gnl|dasNov1|scaffold_8883 (40140-40337)
               

               
               2-155, gnl|echTel1|scaffold_319589 (57986-58178)
               

               
               2-155, gnl|fr1|chrUn (200970685-200970878)
               

               
               2-155, gnl|galGal2|chr10 (5101163-5100980)
               

               
               2-155, gnl|hg17|chr15 (60791385-60791582)
               

               
               2-155, gnl|Hg17|chr15 (60791416-60791569)
               

               
               2-155, gnl|loxAfr1|scaffold_52115 (12835-13031)
               

               
               2-155, gnl|mm7|chr9 (67375721-67375526)
               

               
               2-155, gnl|Mm7|chr9 (67375688-67375535)
               

               
               2-155, gnl|monDom2|scaffold_12 (51296569-51296371)
               

               
               2-155, gnl|oryCun1|scaffold_205030 (72428-72623)
               

               
               2-155, gnl|panTro1|chr16 (61244556-61244753)
               

               
               2-155, gnl|rheMac2|chr7 (41093782-41093974)
               

               
               2-155, gnl|rn3|chr8 (71671632-71671436)
               

               
               2-155, gnl|tetNig1|chr5 (2598596-2598392)
               

               
               2-155, gnl|xenTro1|scaffold_62 (1020967-1021138)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-155, gnl|bosTau2|chr10 (33312120-33311967)
               

               
               2-155, gnl|canFam2|chr30 (30308127-30308324)
               

               
               2-155, gnl|danRer3|chr13 (38005338-38005520)
               

               
               2-155, gnl|dasNov1|scaffold_8883 (40140-40337)
               

               
               2-155, gnl|echTel1|scaffold_319589 (57986-58178)
               

               
               2-155, gnl|fr1|chrUn (200970685-200970878)
               

               
               2-155, gnl|galGal2|chr10 (5101163-5100980)
               

               
               2-155, gnl|hg17|chr15 (60791385-60791582)
               

               
               2-155, gnl|Hg17|chr15 (60791416-60791569)
               

               
               2-155, gnl|loxAfr1|scaffold_52115 (12835-13031)
               

               
               2-155, gnl|mm7|chr9 (67375721-67375526)
               

               
               2-155, gnl|Mm7|chr9 (67375688-67375535)
               

               
               2-155, gnl|monDom2|scaffold_12 (51296569-51296371)
               

               
               2-155, gnl|oryCun1|scaffold_205030 (72428-72623)
               

               
               2-155, gnl|panTro1|chr16 (61244556-61244753)
               

               
               2-155, gnl|rheMac2|chr7 (41093782-41093974)
               

               
               2-155, gnl|rn3|chr8 (71671632-71671436)
               

               
               2-155, gnl|tetNig1|chr5 (2598596-2598392)
               

               
               2-155, gnl|xenTro1|scaffold_62 (1020967-1021138)

	2-155, gnl\|bosTau2\|chr10 (33312120-33311967)
	2-155, gnl\|canFam2\|chr30 (30308127-30308324)
	2-155, gnl\|danRer3\|chr13 (38005338-38005520)
	2-155, gnl\|dasNov1\|scaffold_8883 (40140-40337)
	2-155, gnl\|echTel1\|scaffold_319589 (57986-58178)
	2-155, gnl\|fr1\|chrUn (200970685-200970878)
	2-155, gnl\|galGal2\|chr10 (5101163-5100980)
	2-155, gnl\|hg17\|chr15 (60791385-60791582)
	2-155, gnl\|Hg17\|chr15 (60791416-60791569)
	2-155, gnl\|loxAfr1\|scaffold_52115 (12835-13031)
	2-155, gnl\|mm7\|chr9 (67375721-67375526)
	2-155, gnl\|Mm7\|chr9 (67375688-67375535)
	2-155, gnl\|monDom2\|scaffold_12 (51296569-51296371)
	2-155, gnl\|oryCun1\|scaffold_205030 (72428-72623)
	2-155, gnl\|panTro1\|chr16 (61244556-61244753)
	2-155, gnl\|rheMac2\|chr7 (41093782-41093974)
	2-155, gnl\|rn3\|chr8 (71671632-71671436)
	2-155, gnl\|tetNig1\|chr5 (2598596-2598392)
	2-155, gnl\|xenTro1\|scaffold_62 (1020967-1021138)