Non-Coding RNA Search

Pig2-29A08

Sequence:


               
               GACCCAACACATCCAGTGTCGGAAAACAAACAACAGTGGCAGAGTCCAAACAGGAAGAGA
TGGGATTAAAAATGGAAGAGGCAGGGGCCTCAGTGGAGGAAATACTGAAAGCAGACGGGC
AGGGACAGACCGGACCCAGGGGTCACCCAGGCAGCTGGTGGCCCGGGGTGGCAACCAAAA
GGACAGTGCCTTGAATTTTCTTGTCAGCTTCAGGGCGCCTCCTCCCACCCCCTTTCCCAG
GGTATCTGTGGGCGGCCCCGGCTGGGGAGGGCAGCCACAGCCACAGCCACAGAATTTCCT
GAAAGTTTACTTTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCAACACATCCAGTGTCGGAAAACAAACAACAGTGGCAGAGTCCAAACAGGAAGAGA
TGGGATTAAAAATGGAAGAGGCAGGGGCCTCAGTGGAGGAAATACTGAAAGCAGACGGGC
AGGGACAGACCGGACCCAGGGGTCACCCAGGCAGCTGGTGGCCCGGGGTGGCAACCAAAA
GGACAGTGCCTTGAATTTTCTTGTCAGCTTCAGGGCGCCTCCTCCCACCCCCTTTCCCAG
GGTATCTGTGGGCGGCCCCGGCTGGGGAGGGCAGCCACAGCCACAGCCACAGAATTTCCT
GAAAGTTTACTTTGCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               197-314, - strand, RNAz p=0.596421

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-314, - strand, RNAz p=0.596421

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-314, gnl|bosTau2|chr29 (36275789-36276097)
               

               
               2-314, gnl|canFam2|chr18 (53119748-53119134)
               

               
               2-314, gnl|dasNov1|scaffold_174079 (5327-4682)
               

               
               2-314, gnl|echTel1|scaffold_311465 (37952-37310)
               

               
               2-314, gnl|hg17|chr11 (66888378-66889028)
               

               
               2-314, gnl|Hg17|chr11 (66888731-66888393)
               

               
               2-314, gnl|loxAfr1|scaffold_91407 (2805-2143)
               

               
               2-314, gnl|mm7|chr19 (4118141-4117533)
               

               
               2-314, gnl|Mm7|chr19 (4117788-4118124)
               

               
               2-314, gnl|oryCun1|scaffold_111612 (5132-4558)
               

               
               2-314, gnl|rheMac2|chr14 (7097474-7096823)
               

               
               2-314, gnl|rn3|chr1 (206959626-206959003)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-314, gnl|bosTau2|chr29 (36275789-36276097)
               

               
               2-314, gnl|canFam2|chr18 (53119748-53119134)
               

               
               2-314, gnl|dasNov1|scaffold_174079 (5327-4682)
               

               
               2-314, gnl|echTel1|scaffold_311465 (37952-37310)
               

               
               2-314, gnl|hg17|chr11 (66888378-66889028)
               

               
               2-314, gnl|Hg17|chr11 (66888731-66888393)
               

               
               2-314, gnl|loxAfr1|scaffold_91407 (2805-2143)
               

               
               2-314, gnl|mm7|chr19 (4118141-4117533)
               

               
               2-314, gnl|Mm7|chr19 (4117788-4118124)
               

               
               2-314, gnl|oryCun1|scaffold_111612 (5132-4558)
               

               
               2-314, gnl|rheMac2|chr14 (7097474-7096823)
               

               
               2-314, gnl|rn3|chr1 (206959626-206959003)

	2-314, gnl\|bosTau2\|chr29 (36275789-36276097)
	2-314, gnl\|canFam2\|chr18 (53119748-53119134)
	2-314, gnl\|dasNov1\|scaffold_174079 (5327-4682)
	2-314, gnl\|echTel1\|scaffold_311465 (37952-37310)
	2-314, gnl\|hg17\|chr11 (66888378-66889028)
	2-314, gnl\|Hg17\|chr11 (66888731-66888393)
	2-314, gnl\|loxAfr1\|scaffold_91407 (2805-2143)
	2-314, gnl\|mm7\|chr19 (4118141-4117533)
	2-314, gnl\|Mm7\|chr19 (4117788-4118124)
	2-314, gnl\|oryCun1\|scaffold_111612 (5132-4558)
	2-314, gnl\|rheMac2\|chr14 (7097474-7096823)
	2-314, gnl\|rn3\|chr1 (206959626-206959003)