Non-Coding RNA Search

Pig2-29E13

Sequence:


               
               GCATTGATGGATGAGAAATTATTACTCTGATATTTGAAAGGTGTTTGGGGGTTCATCAAG
ATGAGAGGTATGATAAATATAAGATGCCATTGTTTTTACCTGTACTTTCTTCAGGGTATC
CTGTCTTGGTAGTGAATGGAAGAGGGCCTGGTCCCTGGGGCAGTGCAGAAGGCACTTTCA
TCATCTCACTCACTGCAAATGTCATGTGAGGTTTCATGGAAGTATTAAGAGATCCAATTA
AGAAGAATAGTTCTGAGTCTAAACCAGCCCAGAGTGGCTTCTCTAGGGGAAACTCCCTGC
TCAGCTGGTACGTTTGTGTTTGTCATTAGGGACACCTTGTATCCCAGGTGCCTGCCTTGA
GACATCTGCCTGTACTGGCTTCATGTTGCACACAAATCCACATTGAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTGATGGATGAGAAATTATTACTCTGATATTTGAAAGGTGTTTGGGGGTTCATCAAG
ATGAGAGGTATGATAAATATAAGATGCCATTGTTTTTACCTGTACTTTCTTCAGGGTATC
CTGTCTTGGTAGTGAATGGAAGAGGGCCTGGTCCCTGGGGCAGTGCAGAAGGCACTTTCA
TCATCTCACTCACTGCAAATGTCATGTGAGGTTTCATGGAAGTATTAAGAGATCCAATTA
AGAAGAATAGTTCTGAGTCTAAACCAGCCCAGAGTGGCTTCTCTAGGGGAAACTCCCTGC
TCAGCTGGTACGTTTGTGTTTGTCATTAGGGACACCTTGTATCCCAGGTGCCTGCCTTGA
GACATCTGCCTGTACTGGCTTCATGTTGCACACAAATCCACATTGAATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               110-228, - strand, RNAz p=0.991313
               

               
               280-409, - strand, RNAz p=0.672202

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-228, - strand, RNAz p=0.991313
               

               
               280-409, - strand, RNAz p=0.672202

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               2-409, gnl|bosTau2|chr22 (14578258-14577850)
               

               
               2-409, gnl|canFam2|chr20 (11726737-11726258)
               

               
               2-409, gnl|dasNov1|scaffold_36002 (5132-4642)
               

               
               2-409, gnl|echTel1|scaffold_310129 (45822-46306)
               

               
               2-409, gnl|hg17|chr3 (9449793-9450279)
               

               
               2-409, gnl|Hg17|chr3 (9449942-9450348)
               

               
               2-409, gnl|loxAfr1|scaffold_5529 (10488-10979)
               

               
               2-409, gnl|mm7|chr6 (113270102-113270577)
               

               
               2-409, gnl|Mm7|chr6 (113270245-113270646)
               

               
               2-409, gnl|monDom2|scaffold_5 (36293705-36294200)
               

               
               2-409, gnl|oryCun1|scaffold_206156 (38477-38953)
               

               
               2-409, gnl|panTro1|chr2 (9823533-9824018)
               

               
               2-409, gnl|rheMac2|chr2 (51559025-51558539)
               

               
               2-409, gnl|rn3|chr4 (149230762-149231237)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-409, gnl|bosTau2|chr22 (14578258-14577850)
               

               
               2-409, gnl|canFam2|chr20 (11726737-11726258)
               

               
               2-409, gnl|dasNov1|scaffold_36002 (5132-4642)
               

               
               2-409, gnl|echTel1|scaffold_310129 (45822-46306)
               

               
               2-409, gnl|hg17|chr3 (9449793-9450279)
               

               
               2-409, gnl|Hg17|chr3 (9449942-9450348)
               

               
               2-409, gnl|loxAfr1|scaffold_5529 (10488-10979)
               

               
               2-409, gnl|mm7|chr6 (113270102-113270577)
               

               
               2-409, gnl|Mm7|chr6 (113270245-113270646)
               

               
               2-409, gnl|monDom2|scaffold_5 (36293705-36294200)
               

               
               2-409, gnl|oryCun1|scaffold_206156 (38477-38953)
               

               
               2-409, gnl|panTro1|chr2 (9823533-9824018)
               

               
               2-409, gnl|rheMac2|chr2 (51559025-51558539)
               

               
               2-409, gnl|rn3|chr4 (149230762-149231237)

	110-228, - strand, RNAz p=0.991313
	280-409, - strand, RNAz p=0.672202

	2-409, gnl\|bosTau2\|chr22 (14578258-14577850)
	2-409, gnl\|canFam2\|chr20 (11726737-11726258)
	2-409, gnl\|dasNov1\|scaffold_36002 (5132-4642)
	2-409, gnl\|echTel1\|scaffold_310129 (45822-46306)
	2-409, gnl\|hg17\|chr3 (9449793-9450279)
	2-409, gnl\|Hg17\|chr3 (9449942-9450348)
	2-409, gnl\|loxAfr1\|scaffold_5529 (10488-10979)
	2-409, gnl\|mm7\|chr6 (113270102-113270577)
	2-409, gnl\|Mm7\|chr6 (113270245-113270646)
	2-409, gnl\|monDom2\|scaffold_5 (36293705-36294200)
	2-409, gnl\|oryCun1\|scaffold_206156 (38477-38953)
	2-409, gnl\|panTro1\|chr2 (9823533-9824018)
	2-409, gnl\|rheMac2\|chr2 (51559025-51558539)
	2-409, gnl\|rn3\|chr4 (149230762-149231237)