Non-Coding RNA Search

Pig2-29I07

Sequence:


               
               GGCTCTGTTTCTAATGGGGTTGGCCCACAGCTCCTCCAGCACAGTCCTGCCAGCAGAGCA
AGGAGCATACCCAAGAGGGACCAGCAAAGGGGAAGAGAGGCTGAGGCCTTAAAACCCCCC
ATGTGAACAAGACTTGTGCTCAGCCTTGCCCTCTTTAGAAAATGAAAGCGCTCCCAGGAG
AACTGATGCTTTAAGGCCCTGACAAGTTCCTCTGAATCTGTTTAACAAATATCATTGTCA
AGTGTATGTCTGATAGCAAGGGAAGAGAAAGAGGAGGCACAGAGCAGAAGCCTGGGTGGA
GGGGCACAAAACACCAAAGGCACCGTCCTTCACAGCGGTGCCTGGATCTCCTGGGGGAAG
AGGAAGCCTTAAGGGTCTTTAGTGTCTGCCAAAGACCCCAGAAAGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCTGTTTCTAATGGGGTTGGCCCACAGCTCCTCCAGCACAGTCCTGCCAGCAGAGCA
AGGAGCATACCCAAGAGGGACCAGCAAAGGGGAAGAGAGGCTGAGGCCTTAAAACCCCCC
ATGTGAACAAGACTTGTGCTCAGCCTTGCCCTCTTTAGAAAATGAAAGCGCTCCCAGGAG
AACTGATGCTTTAAGGCCCTGACAAGTTCCTCTGAATCTGTTTAACAAATATCATTGTCA
AGTGTATGTCTGATAGCAAGGGAAGAGAAAGAGGAGGCACAGAGCAGAAGCCTGGGTGGA
GGGGCACAAAACACCAAAGGCACCGTCCTTCACAGCGGTGCCTGGATCTCCTGGGGGAAG
AGGAAGCCTTAAGGGTCTTTAGTGTCTGCCAAAGACCCCAGAAAGAATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-155, - strand, RNAz p=0.603019
               

               
               145-245, - strand, RNAz p=0.877542

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-155, - strand, RNAz p=0.603019
               

               
               145-245, - strand, RNAz p=0.877542

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-245, gnl|bosTau2|chr19 (28866084-28866326)
               

               
               1-245, gnl|canFam2|chr9 (29801752-29802366)
               

               
               1-245, gnl|dasNov1|scaffold_16620 (21379-20778)
               

               
               1-245, gnl|echTel1|scaffold_303981 (13127-12556)
               

               
               1-245, gnl|hg17|chr17 (45989803-45990422)
               

               
               1-245, gnl|Hg17|chr17 (45990037-45989802)
               

               
               1-245, gnl|loxAfr1|scaffold_16228 (7439-8116)
               

               
               1-245, gnl|mm7|chr11 (94586452-94585876)
               

               
               1-245, gnl|oryCun1|scaffold_213401 (74933-75418)
               

               
               1-245, gnl|panTro1|chr19_random (31626821-31627430)
               

               
               1-245, gnl|rheMac2|chr16 (34798841-34799468)
               

               
               1-245, gnl|rn3|chr10 (83130556-83129991)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-245, gnl|bosTau2|chr19 (28866084-28866326)
               

               
               1-245, gnl|canFam2|chr9 (29801752-29802366)
               

               
               1-245, gnl|dasNov1|scaffold_16620 (21379-20778)
               

               
               1-245, gnl|echTel1|scaffold_303981 (13127-12556)
               

               
               1-245, gnl|hg17|chr17 (45989803-45990422)
               

               
               1-245, gnl|Hg17|chr17 (45990037-45989802)
               

               
               1-245, gnl|loxAfr1|scaffold_16228 (7439-8116)
               

               
               1-245, gnl|mm7|chr11 (94586452-94585876)
               

               
               1-245, gnl|oryCun1|scaffold_213401 (74933-75418)
               

               
               1-245, gnl|panTro1|chr19_random (31626821-31627430)
               

               
               1-245, gnl|rheMac2|chr16 (34798841-34799468)
               

               
               1-245, gnl|rn3|chr10 (83130556-83129991)

	40-155, - strand, RNAz p=0.603019
	145-245, - strand, RNAz p=0.877542

	1-245, gnl\|bosTau2\|chr19 (28866084-28866326)
	1-245, gnl\|canFam2\|chr9 (29801752-29802366)
	1-245, gnl\|dasNov1\|scaffold_16620 (21379-20778)
	1-245, gnl\|echTel1\|scaffold_303981 (13127-12556)
	1-245, gnl\|hg17\|chr17 (45989803-45990422)
	1-245, gnl\|Hg17\|chr17 (45990037-45989802)
	1-245, gnl\|loxAfr1\|scaffold_16228 (7439-8116)
	1-245, gnl\|mm7\|chr11 (94586452-94585876)
	1-245, gnl\|oryCun1\|scaffold_213401 (74933-75418)
	1-245, gnl\|panTro1\|chr19_random (31626821-31627430)
	1-245, gnl\|rheMac2\|chr16 (34798841-34799468)
	1-245, gnl\|rn3\|chr10 (83130556-83129991)