Non-Coding RNA Search

Pig2-29I17

Sequence:


               
               GGCTGCAGGCCCGGGTGAAGGACTTGTCCCTCCGGTTTTCTGAAGCCAGTCACCGACACA
AAGAAAAACTTGCCAAAATGGAAGAACTCAAAACCAAAGTGGAGCTGTTTGAGAACCTCT
CAGAGAAGCTCCAGACCTTCCTAGAAACAAAAACCCAGGCTCTCACGGAGGCAGACGTGC
CCGGGCGCGATGTCACCGAGTTGTCCCAGTACCTGCAGGAATCAACTTATGAATTGCAAG
AATGCAAGAAAGATCTTGAAGTTTTGCAGAATCTCTTGAAGGAAATCTCCAACCATGGTT
TGCCAGGTGATAAGGCTCTGGTCTTTGAAAAAACAAATAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCAGGCCCGGGTGAAGGACTTGTCCCTCCGGTTTTCTGAAGCCAGTCACCGACACA
AAGAAAAACTTGCCAAAATGGAAGAACTCAAAACCAAAGTGGAGCTGTTTGAGAACCTCT
CAGAGAAGCTCCAGACCTTCCTAGAAACAAAAACCCAGGCTCTCACGGAGGCAGACGTGC
CCGGGCGCGATGTCACCGAGTTGTCCCAGTACCTGCAGGAATCAACTTATGAATTGCAAG
AATGCAAGAAAGATCTTGAAGTTTTGCAGAATCTCTTGAAGGAAATCTCCAACCATGGTT
TGCCAGGTGATAAGGCTCTGGTCTTTGAAAAAACAAATAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               41-160, - strand, RNAz p=0.577927

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.577927

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-222, gnl|bosTau2|chr23 (1528796-1528576)
               

               
               2-222, gnl|canFam2|chr12 (26822729-26822900)
               

               
               2-222, gnl|danRer3|chr14 (22947078-22946907)
               

               
               2-222, gnl|dasNov1|scaffold_61 (146276-146447)
               

               
               2-222, gnl|echTel1|scaffold_189211 (3231-3060)
               

               
               2-222, gnl|fr1|chrUn (83378072-83378242)
               

               
               2-222, gnl|galGal2|chr3 (85354425-85354254)
               

               
               2-222, gnl|hg17|chr6 (56545502-56545673)
               

               
               2-222, gnl|Hg17|chr6 (56545720-56545500)
               

               
               2-222, gnl|loxAfr1|scaffold_217 (184544-184714)
               

               
               2-222, gnl|mm7|chr1 (34435767-34435596)
               

               
               2-222, gnl|Mm7|chr1 (34435547-34435767)
               

               
               2-222, gnl|monDom2|scaffold_0 (178876424-178876253)
               

               
               2-222, gnl|oryCun1|scaffold_207303 (33783-33612)
               

               
               2-222, gnl|panTro1|chr5 (57837486-57837657)
               

               
               2-222, gnl|rheMac2|chr4 (56212361-56212532)
               

               
               2-222, gnl|rn3|chr9 (32954529-32954358)
               

               
               2-222, gnl|tetNig1|chr17 (4330460-4330289)
               

               
               2-222, gnl|xenTro1|scaffold_833 (268472-268643)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-222, gnl|bosTau2|chr23 (1528796-1528576)
               

               
               2-222, gnl|canFam2|chr12 (26822729-26822900)
               

               
               2-222, gnl|danRer3|chr14 (22947078-22946907)
               

               
               2-222, gnl|dasNov1|scaffold_61 (146276-146447)
               

               
               2-222, gnl|echTel1|scaffold_189211 (3231-3060)
               

               
               2-222, gnl|fr1|chrUn (83378072-83378242)
               

               
               2-222, gnl|galGal2|chr3 (85354425-85354254)
               

               
               2-222, gnl|hg17|chr6 (56545502-56545673)
               

               
               2-222, gnl|Hg17|chr6 (56545720-56545500)
               

               
               2-222, gnl|loxAfr1|scaffold_217 (184544-184714)
               

               
               2-222, gnl|mm7|chr1 (34435767-34435596)
               

               
               2-222, gnl|Mm7|chr1 (34435547-34435767)
               

               
               2-222, gnl|monDom2|scaffold_0 (178876424-178876253)
               

               
               2-222, gnl|oryCun1|scaffold_207303 (33783-33612)
               

               
               2-222, gnl|panTro1|chr5 (57837486-57837657)
               

               
               2-222, gnl|rheMac2|chr4 (56212361-56212532)
               

               
               2-222, gnl|rn3|chr9 (32954529-32954358)
               

               
               2-222, gnl|tetNig1|chr17 (4330460-4330289)
               

               
               2-222, gnl|xenTro1|scaffold_833 (268472-268643)

	2-222, gnl\|bosTau2\|chr23 (1528796-1528576)
	2-222, gnl\|canFam2\|chr12 (26822729-26822900)
	2-222, gnl\|danRer3\|chr14 (22947078-22946907)
	2-222, gnl\|dasNov1\|scaffold_61 (146276-146447)
	2-222, gnl\|echTel1\|scaffold_189211 (3231-3060)
	2-222, gnl\|fr1\|chrUn (83378072-83378242)
	2-222, gnl\|galGal2\|chr3 (85354425-85354254)
	2-222, gnl\|hg17\|chr6 (56545502-56545673)
	2-222, gnl\|Hg17\|chr6 (56545720-56545500)
	2-222, gnl\|loxAfr1\|scaffold_217 (184544-184714)
	2-222, gnl\|mm7\|chr1 (34435767-34435596)
	2-222, gnl\|Mm7\|chr1 (34435547-34435767)
	2-222, gnl\|monDom2\|scaffold_0 (178876424-178876253)
	2-222, gnl\|oryCun1\|scaffold_207303 (33783-33612)
	2-222, gnl\|panTro1\|chr5 (57837486-57837657)
	2-222, gnl\|rheMac2\|chr4 (56212361-56212532)
	2-222, gnl\|rn3\|chr9 (32954529-32954358)
	2-222, gnl\|tetNig1\|chr17 (4330460-4330289)
	2-222, gnl\|xenTro1\|scaffold_833 (268472-268643)