Non-Coding RNA Search

Pig2-30N24

Sequence:


               
               GGAAGTAGATTTGTTTTTATGTGTTAGTAGCCCTCTTAAAATGTAAGAAAACATGTGACA
AGTGGCCTTTTATTAAAGACATCTTTCTCACCAACTGGATACGTGCACACTGAAATGTAT
GAGGTCTCAATAGCAAATAATGAGAAAAGATTTCTGTGTTCTCATTACCTAACTTCACAT
GCTTTGTAACCAGTTTTTCCATTACTAACATTTTTCTTCCCCAAATACCAGATATTTGGT
GGCCCCTACTAAATCAGTACTCAGTGTTCCCTCTGCTGGCTTTGTAGTACATGAAGTGAT
TCTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGTAGATTTGTTTTTATGTGTTAGTAGCCCTCTTAAAATGTAAGAAAACATGTGACA
AGTGGCCTTTTATTAAAGACATCTTTCTCACCAACTGGATACGTGCACACTGAAATGTAT
GAGGTCTCAATAGCAAATAATGAGAAAAGATTTCTGTGTTCTCATTACCTAACTTCACAT
GCTTTGTAACCAGTTTTTCCATTACTAACATTTTTCTTCCCCAAATACCAGATATTTGGT
GGCCCCTACTAAATCAGTACTCAGTGTTCCCTCTGCTGGCTTTGTAGTACATGAAGTGAT
TCTTAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               81-197, + strand, RNAz p=0.838247

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-197, + strand, RNAz p=0.838247

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-307, gnl|bosTau2|chr23 (29382909-29383214)
               

               
               2-307, gnl|canFam2|chr35 (23112820-23113341)
               

               
               2-307, gnl|dasNov1|scaffold_8408 (5049-5585)
               

               
               2-307, gnl|echTel1|scaffold_315227 (3811-4349)
               

               
               2-307, gnl|hg17|chr6 (21698519-21699055)
               

               
               2-307, gnl|Hg17|chr6 (21699019-21698717)
               

               
               2-307, gnl|mm7|chr13 (28322655-28322165)
               

               
               2-307, gnl|Mm7|chr13 (28322204-28322472)
               

               
               2-307, gnl|monDom2|scaffold_3 (111273409-111273985)
               

               
               2-307, gnl|oryCun1|scaffold_213219 (307705-307151)
               

               
               2-307, gnl|panTro1|chr5 (22103169-22103705)
               

               
               2-307, gnl|rheMac2|chr4 (21571732-21572263)
               

               
               2-307, gnl|rn3|chr17 (42172320-42172845)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-307, gnl|bosTau2|chr23 (29382909-29383214)
               

               
               2-307, gnl|canFam2|chr35 (23112820-23113341)
               

               
               2-307, gnl|dasNov1|scaffold_8408 (5049-5585)
               

               
               2-307, gnl|echTel1|scaffold_315227 (3811-4349)
               

               
               2-307, gnl|hg17|chr6 (21698519-21699055)
               

               
               2-307, gnl|Hg17|chr6 (21699019-21698717)
               

               
               2-307, gnl|mm7|chr13 (28322655-28322165)
               

               
               2-307, gnl|Mm7|chr13 (28322204-28322472)
               

               
               2-307, gnl|monDom2|scaffold_3 (111273409-111273985)
               

               
               2-307, gnl|oryCun1|scaffold_213219 (307705-307151)
               

               
               2-307, gnl|panTro1|chr5 (22103169-22103705)
               

               
               2-307, gnl|rheMac2|chr4 (21571732-21572263)
               

               
               2-307, gnl|rn3|chr17 (42172320-42172845)

	2-307, gnl\|bosTau2\|chr23 (29382909-29383214)
	2-307, gnl\|canFam2\|chr35 (23112820-23113341)
	2-307, gnl\|dasNov1\|scaffold_8408 (5049-5585)
	2-307, gnl\|echTel1\|scaffold_315227 (3811-4349)
	2-307, gnl\|hg17\|chr6 (21698519-21699055)
	2-307, gnl\|Hg17\|chr6 (21699019-21698717)
	2-307, gnl\|mm7\|chr13 (28322655-28322165)
	2-307, gnl\|Mm7\|chr13 (28322204-28322472)
	2-307, gnl\|monDom2\|scaffold_3 (111273409-111273985)
	2-307, gnl\|oryCun1\|scaffold_213219 (307705-307151)
	2-307, gnl\|panTro1\|chr5 (22103169-22103705)
	2-307, gnl\|rheMac2\|chr4 (21571732-21572263)
	2-307, gnl\|rn3\|chr17 (42172320-42172845)