Non-Coding RNA Search

Pig2-32B05

Sequence:


               
               GGGGTCCTCTCTAACAGCCAGACATGGCCCTCGCATCAGTACAGGGACACCAGGTCCCGT
GGGGTGGAGGGGGGGTGCGTGGCAAGCGAGAGGGACCCTGCAGAGTTCAGGGACCCAGGA
GCCCTGGCCCAGGTCCTGGTGGTCCATCTGGGGCACCGCCGTATTGCCCACGACCTGCGG
CTACTGCTTTTGCAGCGCCTATGGCTAGGCAGAACCGGCCAGGCCCCCGTTGTGGAGTAT
CCTATATGCTTGGTGTGTCTTCGGCCCCGAAGCCCCTCTTGCCCCAGCCCCAGGTACAGG
ACTGGACCCAGGCTGCTTGCTTTCCCCCAGCTACTGCCCTGTGCACCGGGCCAGGAATCC
GG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTCCTCTCTAACAGCCAGACATGGCCCTCGCATCAGTACAGGGACACCAGGTCCCGT
GGGGTGGAGGGGGGGTGCGTGGCAAGCGAGAGGGACCCTGCAGAGTTCAGGGACCCAGGA
GCCCTGGCCCAGGTCCTGGTGGTCCATCTGGGGCACCGCCGTATTGCCCACGACCTGCGG
CTACTGCTTTTGCAGCGCCTATGGCTAGGCAGAACCGGCCAGGCCCCCGTTGTGGAGTAT
CCTATATGCTTGGTGTGTCTTCGGCCCCGAAGCCCCTCTTGCCCCAGCCCCAGGTACAGG
ACTGGACCCAGGCTGCTTGCTTTCCCCCAGCTACTGCCCTGTGCACCGGGCCAGGAATCC
GG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               19-124, - strand, RNAz p=0.728865
               

               
               115-234, - strand, RNAz p=0.960366

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-124, - strand, RNAz p=0.728865
               

               
               115-234, - strand, RNAz p=0.960366

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-362, gnl|bosTau2|chr11 (52308060-52307699)
               

               
               1-362, gnl|dasNov1|scaffold_15300 (2727-2154)
               

               
               1-362, gnl|echTel1|scaffold_311276 (5789-5246)
               

               
               1-362, gnl|hg17|chr2 (27271735-27272284)
               

               
               1-362, gnl|Hg17|chr2 (27272347-27271980)
               

               
               1-362, gnl|loxAfr1|scaffold_20376 (8983-9547)
               

               
               1-362, gnl|mm7|chr14 (95610327-95610855)
               

               
               1-362, gnl|Mm7|chr14 (95610912-95610551)
               

               
               1-362, gnl|monDom2|scaffold_1 (149153825-149153343)
               

               
               1-362, gnl|oryCun1|scaffold_189177 (18252-18774)
               

               
               1-362, gnl|panTro1|chr12 (28210379-28210923)
               

               
               1-362, gnl|rheMac2|chr13 (27089776-27090325)
               

               
               1-362, gnl|rn3|chr6 (25403147-25402625)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr11 (52308060-52307699)
               

               
               1-362, gnl|dasNov1|scaffold_15300 (2727-2154)
               

               
               1-362, gnl|echTel1|scaffold_311276 (5789-5246)
               

               
               1-362, gnl|hg17|chr2 (27271735-27272284)
               

               
               1-362, gnl|Hg17|chr2 (27272347-27271980)
               

               
               1-362, gnl|loxAfr1|scaffold_20376 (8983-9547)
               

               
               1-362, gnl|mm7|chr14 (95610327-95610855)
               

               
               1-362, gnl|Mm7|chr14 (95610912-95610551)
               

               
               1-362, gnl|monDom2|scaffold_1 (149153825-149153343)
               

               
               1-362, gnl|oryCun1|scaffold_189177 (18252-18774)
               

               
               1-362, gnl|panTro1|chr12 (28210379-28210923)
               

               
               1-362, gnl|rheMac2|chr13 (27089776-27090325)
               

               
               1-362, gnl|rn3|chr6 (25403147-25402625)

	19-124, - strand, RNAz p=0.728865
	115-234, - strand, RNAz p=0.960366

	1-362, gnl\|bosTau2\|chr11 (52308060-52307699)
	1-362, gnl\|dasNov1\|scaffold_15300 (2727-2154)
	1-362, gnl\|echTel1\|scaffold_311276 (5789-5246)
	1-362, gnl\|hg17\|chr2 (27271735-27272284)
	1-362, gnl\|Hg17\|chr2 (27272347-27271980)
	1-362, gnl\|loxAfr1\|scaffold_20376 (8983-9547)
	1-362, gnl\|mm7\|chr14 (95610327-95610855)
	1-362, gnl\|Mm7\|chr14 (95610912-95610551)
	1-362, gnl\|monDom2\|scaffold_1 (149153825-149153343)
	1-362, gnl\|oryCun1\|scaffold_189177 (18252-18774)
	1-362, gnl\|panTro1\|chr12 (28210379-28210923)
	1-362, gnl\|rheMac2\|chr13 (27089776-27090325)
	1-362, gnl\|rn3\|chr6 (25403147-25402625)