Non-Coding RNA Search

Pig2-32L15

Sequence:


               
               GGAGAGAAGTAGTGGGCATGTTAGTAGACAATTAGTCGAGCCAAGCATGCCTACAAGCTG
CCATCTGGACGAGCTGTTGACTGCCTTTCCTAGTAGCTGATTTGAGAACGTGGAATGCAG
AGAGATAATGCTGCCTATCTGCTATCAGACAGCAGAAAAGGTTTTTGTCTTGGGAAGGCA
AGCCTTCCCTGCAACATTATCTCAGCAGCCCTCTAGCTGCTTACCCTGAAAACTAGCGAC
CCCAAAGGAAGTGTTTCCGTCTGCGGATACGGGTCCTGTGCGTGGCTGTGGCATATGAGT
GGCAGGTCTGAAGAAGCAGGTGTGTGTTCGTATGAGCACTGGACTGTAACGCAGGCGGAC
GCTCTCGGGTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGAAGTAGTGGGCATGTTAGTAGACAATTAGTCGAGCCAAGCATGCCTACAAGCTG
CCATCTGGACGAGCTGTTGACTGCCTTTCCTAGTAGCTGATTTGAGAACGTGGAATGCAG
AGAGATAATGCTGCCTATCTGCTATCAGACAGCAGAAAAGGTTTTTGTCTTGGGAAGGCA
AGCCTTCCCTGCAACATTATCTCAGCAGCCCTCTAGCTGCTTACCCTGAAAACTAGCGAC
CCCAAAGGAAGTGTTTCCGTCTGCGGATACGGGTCCTGTGCGTGGCTGTGGCATATGAGT
GGCAGGTCTGAAGAAGCAGGTGTGTGTTCGTATGAGCACTGGACTGTAACGCAGGCGGAC
GCTCTCGGGTTTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               81-240, + strand, RNAz p=0.999512

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-240, + strand, RNAz p=0.999512

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               81-233, DA801320 OCBBF3 Homo sapiens cDNA clone OCBBF3005498 5', mRNA 
(dbj|DA801320.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB093729 TESTI4 Homo sapiens cDNA clone TESTI4043822 5', mRNA 
(dbj|DB093729.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB119205 THYMU2 Homo sapiens cDNA clone THYMU2026767 5', mRNA 
(dbj|DB119205.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB166448 THYRO1 Homo sapiens cDNA clone THYRO1001550 5', mRNA 
(dbj|DB166448.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB235187 TRACH3 Homo sapiens cDNA clone TRACH3030050 5', mRNA 
(dbj|DB235187.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB238270 TRACH3 Homo sapiens cDNA clone TRACH3034177 5', mRNA 
(dbj|DB238270.1|), blast E-value=0, identity=91.5%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               81-233, DA801320 OCBBF3 Homo sapiens cDNA clone OCBBF3005498 5', mRNA 
(dbj|DA801320.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB093729 TESTI4 Homo sapiens cDNA clone TESTI4043822 5', mRNA 
(dbj|DB093729.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB119205 THYMU2 Homo sapiens cDNA clone THYMU2026767 5', mRNA 
(dbj|DB119205.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB166448 THYRO1 Homo sapiens cDNA clone THYRO1001550 5', mRNA 
(dbj|DB166448.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB235187 TRACH3 Homo sapiens cDNA clone TRACH3030050 5', mRNA 
(dbj|DB235187.1|), blast E-value=0, identity=91.5% 
               

               
               81-233, DB238270 TRACH3 Homo sapiens cDNA clone TRACH3034177 5', mRNA 
(dbj|DB238270.1|), blast E-value=0, identity=91.5%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF049884, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF049884, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-374, gnl|bosTau2|chr27 (9152094-9152466)
               

               
               2-374, gnl|Hg17|chr4 (187108441-187108068)
               

               
               2-374, gnl|Mm7|chr8 (44405661-44406027)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-374, gnl|bosTau2|chr27 (9152094-9152466)
               

               
               2-374, gnl|Hg17|chr4 (187108441-187108068)
               

               
               2-374, gnl|Mm7|chr8 (44405661-44406027)

	81-233, DA801320 OCBBF3 Homo sapiens cDNA clone OCBBF3005498 5', mRNA (dbj\|DA801320.1\|), blast E-value=0, identity=91.5%
	81-233, DB093729 TESTI4 Homo sapiens cDNA clone TESTI4043822 5', mRNA (dbj\|DB093729.1\|), blast E-value=0, identity=91.5%
	81-233, DB119205 THYMU2 Homo sapiens cDNA clone THYMU2026767 5', mRNA (dbj\|DB119205.1\|), blast E-value=0, identity=91.5%
	81-233, DB166448 THYRO1 Homo sapiens cDNA clone THYRO1001550 5', mRNA (dbj\|DB166448.1\|), blast E-value=0, identity=91.5%
	81-233, DB235187 TRACH3 Homo sapiens cDNA clone TRACH3030050 5', mRNA (dbj\|DB235187.1\|), blast E-value=0, identity=91.5%
	81-233, DB238270 TRACH3 Homo sapiens cDNA clone TRACH3034177 5', mRNA (dbj\|DB238270.1\|), blast E-value=0, identity=91.5%

	2-374, gnl\|bosTau2\|chr27 (9152094-9152466)
	2-374, gnl\|Hg17\|chr4 (187108441-187108068)
	2-374, gnl\|Mm7\|chr8 (44405661-44406027)