Non-Coding RNA Search

Pig2-33P18

Sequence:


               
               CAAACAAACAAAACCACCATTGATTTAATAAGTGGATACCTAGGGTTAATATCAGAAGAG
TGGCCAGTTTTGCTTAAGAGAAGGTACACATTGTTTGGGGTGGGCTGGGAGTGGAGAGTC
TAATGTTTTTCTATATCTGGAGGTTTTGACTGTTTCTAACCTTTCAGAGATCCTGTTCAA
CACTTGAGTGTACTTTCTTAGAGTCATGGGTTAATTAGGTAAAGTGGAGATGACACAGGA
GGTATTCTTCAGATTTTTGAGGCTGAAGTGGACACATTTGGAGAGTGAATGGTAGGTAAT
GGGAGGTGATGGCACGTATCAGATAATATTCCCTGAATTGAAGGATAGGGCTGCACTACA
TACATCTTGCATCTTTCAGAGGGGGTTAATAATTAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACAAACAAAACCACCATTGATTTAATAAGTGGATACCTAGGGTTAATATCAGAAGAG
TGGCCAGTTTTGCTTAAGAGAAGGTACACATTGTTTGGGGTGGGCTGGGAGTGGAGAGTC
TAATGTTTTTCTATATCTGGAGGTTTTGACTGTTTCTAACCTTTCAGAGATCCTGTTCAA
CACTTGAGTGTACTTTCTTAGAGTCATGGGTTAATTAGGTAAAGTGGAGATGACACAGGA
GGTATTCTTCAGATTTTTGAGGCTGAAGTGGACACATTTGGAGAGTGAATGGTAGGTAAT
GGGAGGTGATGGCACGTATCAGATAATATTCCCTGAATTGAAGGATAGGGCTGCACTACA
TACATCTTGCATCTTTCAGAGGGGGTTAATAATTAATAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               244-349, + strand, RNAz p=0.587362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-349, + strand, RNAz p=0.587362

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               166-399, gnl|bosTau2|chr25 (17445298-17445521)
               

               
               166-399, gnl|canFam2|chr4 (63925963-63925790)
               

               
               166-399, gnl|echTel1|scaffold_317255 (43135-42985)
               

               
               166-399, gnl|hg17|chr5 (54134374-54134531)
               

               
               166-399, gnl|Hg17|chr5 (54134629-54134394)
               

               
               166-399, gnl|loxAfr1|scaffold_22247 (15915-15736)
               

               
               166-399, gnl|oryCun1|scaffold_83129 (5468-5305)
               

               
               166-399, gnl|panTro1|chr4 (62081791-62081634)
               

               
               166-399, gnl|rheMac2|chr6 (52463625-52463798)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-399, gnl|bosTau2|chr25 (17445298-17445521)
               

               
               166-399, gnl|canFam2|chr4 (63925963-63925790)
               

               
               166-399, gnl|echTel1|scaffold_317255 (43135-42985)
               

               
               166-399, gnl|hg17|chr5 (54134374-54134531)
               

               
               166-399, gnl|Hg17|chr5 (54134629-54134394)
               

               
               166-399, gnl|loxAfr1|scaffold_22247 (15915-15736)
               

               
               166-399, gnl|oryCun1|scaffold_83129 (5468-5305)
               

               
               166-399, gnl|panTro1|chr4 (62081791-62081634)
               

               
               166-399, gnl|rheMac2|chr6 (52463625-52463798)

	166-399, gnl\|bosTau2\|chr25 (17445298-17445521)
	166-399, gnl\|canFam2\|chr4 (63925963-63925790)
	166-399, gnl\|echTel1\|scaffold_317255 (43135-42985)
	166-399, gnl\|hg17\|chr5 (54134374-54134531)
	166-399, gnl\|Hg17\|chr5 (54134629-54134394)
	166-399, gnl\|loxAfr1\|scaffold_22247 (15915-15736)
	166-399, gnl\|oryCun1\|scaffold_83129 (5468-5305)
	166-399, gnl\|panTro1\|chr4 (62081791-62081634)
	166-399, gnl\|rheMac2\|chr6 (52463625-52463798)