Non-Coding RNA Search

Pig2-34K15

Sequence:


               
               GGGAGGATCGAGAGGGAGGAGGCTTCGTTTGCAGCCATGCTGAATCACTGTTGCTGATCA
GATCTCCCGCTGGTTGGCTGGAAGAACTGAGAACAGAGCTAGGATCCTCTGAGGCTTATG
CAAAGCTCAGCGGCTACCACCCCGGCTGGGCCTCGCACAATGGAGGGTGAAAGCATCAAG
CCAAGCTCCCAGCTGCCGATACAGCCTGGGGAAGACGAAAAGAACCATAGGACGATCACT
GTCAACCCCGCCCACATGGGGAAGGCGTTCAAGGTTATGAATGAACTGCGGAGCAAACAG
CTGTTGTGTGACGTGATGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGATCGAGAGGGAGGAGGCTTCGTTTGCAGCCATGCTGAATCACTGTTGCTGATCA
GATCTCCCGCTGGTTGGCTGGAAGAACTGAGAACAGAGCTAGGATCCTCTGAGGCTTATG
CAAAGCTCAGCGGCTACCACCCCGGCTGGGCCTCGCACAATGGAGGGTGAAAGCATCAAG
CCAAGCTCCCAGCTGCCGATACAGCCTGGGGAAGACGAAAAGAACCATAGGACGATCACT
GTCAACCCCGCCCACATGGGGAAGGCGTTCAAGGTTATGAATGAACTGCGGAGCAAACAG
CTGTTGTGTGACGTGATGATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-116, - strand, RNAz p=0.520047

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-116, - strand, RNAz p=0.520047

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-173, gnl|bosTau2|chr7 (34238114-34237942)
               

               
               2-173, gnl|canFam2|chr11 (28457038-28457615)
               

               
               2-173, gnl|dasNov1|scaffold_1966 (70105-69501)
               

               
               2-173, gnl|echTel1|scaffold_300997 (3320-2776)
               

               
               2-173, gnl|hg17|chr5 (137098831-137099432)
               

               
               2-173, gnl|Hg17|chr5 (137099391-137099221)
               

               
               2-173, gnl|loxAfr1|scaffold_57128 (39680-39058)
               

               
               2-173, gnl|mm7|chr13 (57205120-57205697)
               

               
               2-173, gnl|Mm7|chr13 (57205654-57205484)
               

               
               2-173, gnl|monDom2|scaffold_6 (105577323-105576624)
               

               
               2-173, gnl|oryCun1|scaffold_120841 (7229-7821)
               

               
               2-173, gnl|panTro1|chr4 (143699914-143700516)
               

               
               2-173, gnl|rheMac2|chr6 (134135296-134135899)
               

               
               2-173, gnl|rn3|chr17 (12467706-12467174)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-173, gnl|bosTau2|chr7 (34238114-34237942)
               

               
               2-173, gnl|canFam2|chr11 (28457038-28457615)
               

               
               2-173, gnl|dasNov1|scaffold_1966 (70105-69501)
               

               
               2-173, gnl|echTel1|scaffold_300997 (3320-2776)
               

               
               2-173, gnl|hg17|chr5 (137098831-137099432)
               

               
               2-173, gnl|Hg17|chr5 (137099391-137099221)
               

               
               2-173, gnl|loxAfr1|scaffold_57128 (39680-39058)
               

               
               2-173, gnl|mm7|chr13 (57205120-57205697)
               

               
               2-173, gnl|Mm7|chr13 (57205654-57205484)
               

               
               2-173, gnl|monDom2|scaffold_6 (105577323-105576624)
               

               
               2-173, gnl|oryCun1|scaffold_120841 (7229-7821)
               

               
               2-173, gnl|panTro1|chr4 (143699914-143700516)
               

               
               2-173, gnl|rheMac2|chr6 (134135296-134135899)
               

               
               2-173, gnl|rn3|chr17 (12467706-12467174)

	2-173, gnl\|bosTau2\|chr7 (34238114-34237942)
	2-173, gnl\|canFam2\|chr11 (28457038-28457615)
	2-173, gnl\|dasNov1\|scaffold_1966 (70105-69501)
	2-173, gnl\|echTel1\|scaffold_300997 (3320-2776)
	2-173, gnl\|hg17\|chr5 (137098831-137099432)
	2-173, gnl\|Hg17\|chr5 (137099391-137099221)
	2-173, gnl\|loxAfr1\|scaffold_57128 (39680-39058)
	2-173, gnl\|mm7\|chr13 (57205120-57205697)
	2-173, gnl\|Mm7\|chr13 (57205654-57205484)
	2-173, gnl\|monDom2\|scaffold_6 (105577323-105576624)
	2-173, gnl\|oryCun1\|scaffold_120841 (7229-7821)
	2-173, gnl\|panTro1\|chr4 (143699914-143700516)
	2-173, gnl\|rheMac2\|chr6 (134135296-134135899)
	2-173, gnl\|rn3\|chr17 (12467706-12467174)