Non-Coding RNA Search

Pig2-34K16

Sequence:


               
               GCCCATCCCTTCGGTTCCCGATCTCCTCTCGGTCTGACCCATTGCCCGGCCGTGGTACGC
CACCACCAGGCCTCCAAAGCTGAGGTTTCTCCTCCAGCCCGGGATCACCTTCACTTTAGA
GATGTGTGGCCTCTTCCCTCCCAAACAGCCTTCCTTCAAAACCGGGACTCCTGGACCGGT
ACCTGGCCCCCTTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCATCCCTTCGGTTCCCGATCTCCTCTCGGTCTGACCCATTGCCCGGCCGTGGTACGC
CACCACCAGGCCTCCAAAGCTGAGGTTTCTCCTCCAGCCCGGGATCACCTTCACTTTAGA
GATGTGTGGCCTCTTCCCTCCCAAACAGCCTTCCTTCAAAACCGGGACTCCTGGACCGGT
ACCTGGCCCCCTTTCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               2-135, - strand, RNAz p=0.982222
               

               
               10-126, - strand, RNAz p=0.845129

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-135, - strand, RNAz p=0.982222
               

               
               10-126, - strand, RNAz p=0.845129

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-197, gnl|bosTau2|chr15 (14420451-14420646)
               

               
               2-197, gnl|canFam2|chr5 (17573999-17573712)
               

               
               2-197, gnl|hg17|chr11 (118710642-118710953)
               

               
               2-197, gnl|Hg17|chr11 (118710643-118710862)
               

               
               2-197, gnl|loxAfr1|scaffold_34557 (11899-11587)
               

               
               2-197, gnl|mm7|chr9 (44047650-44047386)
               

               
               2-197, gnl|Mm7|chr9 (44047647-44047465)
               

               
               2-197, gnl|monDom2|scaffold_2 (119178215-119177981)
               

               
               2-197, gnl|oryCun1|scaffold_88681 (863-1153)
               

               
               2-197, gnl|panTro1|chr9 (120732750-120733066)
               

               
               2-197, gnl|rheMac2|chr14 (117748198-117748514)
               

               
               2-197, gnl|rn3|chr8 (47104233-47103969)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-197, gnl|bosTau2|chr15 (14420451-14420646)
               

               
               2-197, gnl|canFam2|chr5 (17573999-17573712)
               

               
               2-197, gnl|hg17|chr11 (118710642-118710953)
               

               
               2-197, gnl|Hg17|chr11 (118710643-118710862)
               

               
               2-197, gnl|loxAfr1|scaffold_34557 (11899-11587)
               

               
               2-197, gnl|mm7|chr9 (44047650-44047386)
               

               
               2-197, gnl|Mm7|chr9 (44047647-44047465)
               

               
               2-197, gnl|monDom2|scaffold_2 (119178215-119177981)
               

               
               2-197, gnl|oryCun1|scaffold_88681 (863-1153)
               

               
               2-197, gnl|panTro1|chr9 (120732750-120733066)
               

               
               2-197, gnl|rheMac2|chr14 (117748198-117748514)
               

               
               2-197, gnl|rn3|chr8 (47104233-47103969)

	2-135, - strand, RNAz p=0.982222
	10-126, - strand, RNAz p=0.845129

	2-197, gnl\|bosTau2\|chr15 (14420451-14420646)
	2-197, gnl\|canFam2\|chr5 (17573999-17573712)
	2-197, gnl\|hg17\|chr11 (118710642-118710953)
	2-197, gnl\|Hg17\|chr11 (118710643-118710862)
	2-197, gnl\|loxAfr1\|scaffold_34557 (11899-11587)
	2-197, gnl\|mm7\|chr9 (44047650-44047386)
	2-197, gnl\|Mm7\|chr9 (44047647-44047465)
	2-197, gnl\|monDom2\|scaffold_2 (119178215-119177981)
	2-197, gnl\|oryCun1\|scaffold_88681 (863-1153)
	2-197, gnl\|panTro1\|chr9 (120732750-120733066)
	2-197, gnl\|rheMac2\|chr14 (117748198-117748514)
	2-197, gnl\|rn3\|chr8 (47104233-47103969)