Non-Coding RNA Search

Pig2-34L07

Sequence:


               
               GTTTTTAGACCGTGGAGACTGCGCTGCCCTGCCCTGCACTTGCCCTCACTTCCCGTGTTC
TCACTCAAGTGGAGTTTGCCCTCCCTCACCACTGACGAGACCATGTGTAAAAGTGTGACC
ACAGAGGAATGGAAGAAAGTCTTCTATGAGAAGATGGAGGAGGCAAAGCCGGCTGACAGC
TGGGACCTCATCATAGATCCCAATCTCAAGCACAATGTGCTGGCCCCTGGCTGGAAGCAG
TACCTAGAATTGCATGCCTCTGGCAGGTTCCATTGCTCTTGGTGCTGGCACACCTGGCAG
TCGCCCCACGTGGTCATCCTCTTCCACATGCACCTGGACCGCGCCCAGCGTGCAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTAGACCGTGGAGACTGCGCTGCCCTGCCCTGCACTTGCCCTCACTTCCCGTGTTC
TCACTCAAGTGGAGTTTGCCCTCCCTCACCACTGACGAGACCATGTGTAAAAGTGTGACC
ACAGAGGAATGGAAGAAAGTCTTCTATGAGAAGATGGAGGAGGCAAAGCCGGCTGACAGC
TGGGACCTCATCATAGATCCCAATCTCAAGCACAATGTGCTGGCCCCTGGCTGGAAGCAG
TACCTAGAATTGCATGCCTCTGGCAGGTTCCATTGCTCTTGGTGCTGGCACACCTGGCAG
TCGCCCCACGTGGTCATCCTCTTCCACATGCACCTGGACCGCGCCCAGCGTGCAGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               121-240, + strand, RNAz p=0.548666
               

               
               126-268, - strand, RNAz p=0.91381

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, + strand, RNAz p=0.548666
               

               
               126-268, - strand, RNAz p=0.91381

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-268, gnl|bosTau2|chr1 (49988765-49989031)
               

               
               2-268, gnl|canFam2|chr34 (22684160-22684549)
               

               
               2-268, gnl|dasNov1|scaffold_8697 (4634-5024)
               

               
               2-268, gnl|echTel1|scaffold_320479 (1710-1326)
               

               
               2-268, gnl|hg17|chr3 (188397835-188398226)
               

               
               2-268, gnl|Hg17|chr3 (188398013-188398279)
               

               
               2-268, gnl|loxAfr1|scaffold_15283 (1965-1574)
               

               
               2-268, gnl|mm7|chr16 (23087640-23088029)
               

               
               2-268, gnl|Mm7|chr16 (23087816-23088082)
               

               
               2-268, gnl|monDom2|scaffold_162 (1125895-1125491)
               

               
               2-268, gnl|oryCun1|scaffold_201822 (66066-66456)
               

               
               2-268, gnl|panTro1|chr2 (192481923-192482314)
               

               
               2-268, gnl|rheMac2|chr2 (179533436-179533827)
               

               
               2-268, gnl|rn3|chr11 (79680317-79679928)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-268, gnl|bosTau2|chr1 (49988765-49989031)
               

               
               2-268, gnl|canFam2|chr34 (22684160-22684549)
               

               
               2-268, gnl|dasNov1|scaffold_8697 (4634-5024)
               

               
               2-268, gnl|echTel1|scaffold_320479 (1710-1326)
               

               
               2-268, gnl|hg17|chr3 (188397835-188398226)
               

               
               2-268, gnl|Hg17|chr3 (188398013-188398279)
               

               
               2-268, gnl|loxAfr1|scaffold_15283 (1965-1574)
               

               
               2-268, gnl|mm7|chr16 (23087640-23088029)
               

               
               2-268, gnl|Mm7|chr16 (23087816-23088082)
               

               
               2-268, gnl|monDom2|scaffold_162 (1125895-1125491)
               

               
               2-268, gnl|oryCun1|scaffold_201822 (66066-66456)
               

               
               2-268, gnl|panTro1|chr2 (192481923-192482314)
               

               
               2-268, gnl|rheMac2|chr2 (179533436-179533827)
               

               
               2-268, gnl|rn3|chr11 (79680317-79679928)

	121-240, + strand, RNAz p=0.548666
	126-268, - strand, RNAz p=0.91381

	2-268, gnl\|bosTau2\|chr1 (49988765-49989031)
	2-268, gnl\|canFam2\|chr34 (22684160-22684549)
	2-268, gnl\|dasNov1\|scaffold_8697 (4634-5024)
	2-268, gnl\|echTel1\|scaffold_320479 (1710-1326)
	2-268, gnl\|hg17\|chr3 (188397835-188398226)
	2-268, gnl\|Hg17\|chr3 (188398013-188398279)
	2-268, gnl\|loxAfr1\|scaffold_15283 (1965-1574)
	2-268, gnl\|mm7\|chr16 (23087640-23088029)
	2-268, gnl\|Mm7\|chr16 (23087816-23088082)
	2-268, gnl\|monDom2\|scaffold_162 (1125895-1125491)
	2-268, gnl\|oryCun1\|scaffold_201822 (66066-66456)
	2-268, gnl\|panTro1\|chr2 (192481923-192482314)
	2-268, gnl\|rheMac2\|chr2 (179533436-179533827)
	2-268, gnl\|rn3\|chr11 (79680317-79679928)