Non-Coding RNA Search

Pig2-36K17

Sequence:


               
               GCGCTCCCAGCCCAGGCGAGTCCGGGGTATCCTGGGCGGGGTCGAACCCGCGGCCAATGT
GGGCAGAGGAGGCTTAAAGAGCTCCGGTCCCCGCCTCCCGCGGCACGATGGCTACCGAGC
AGTGGTTCATGGGGCCGCTCCCCGCGGGCTCTGGGGAAACGCCACCTCCAGACGTCTTGG
AATCTGGGGCACACCCCTGCGGAGACCCCTCGTGGTCGCCCTCCCCTGGCCGACCTGGGG
ACCCACCTGAGGTGGAGCCCGAAGACGTCCAGGGGCAGCTGCCCGAGGCCTCCACCTCTA
CGCCCTCCCCCGAGCCTCTGGCCCCAGGACCCAGGCCCGCCCCTCCTCGCCTACCCTTGG
ACACCATGTTCAGCCCCATCACCGAACAGTTCCGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTCCCAGCCCAGGCGAGTCCGGGGTATCCTGGGCGGGGTCGAACCCGCGGCCAATGT
GGGCAGAGGAGGCTTAAAGAGCTCCGGTCCCCGCCTCCCGCGGCACGATGGCTACCGAGC
AGTGGTTCATGGGGCCGCTCCCCGCGGGCTCTGGGGAAACGCCACCTCCAGACGTCTTGG
AATCTGGGGCACACCCCTGCGGAGACCCCTCGTGGTCGCCCTCCCCTGGCCGACCTGGGG
ACCCACCTGAGGTGGAGCCCGAAGACGTCCAGGGGCAGCTGCCCGAGGCCTCCACCTCTA
CGCCCTCCCCCGAGCCTCTGGCCCCAGGACCCAGGCCCGCCCCTCCTCGCCTACCCTTGG
ACACCATGTTCAGCCCCATCACCGAACAGTTCCGTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               80-196, - strand, RNAz p=0.963942

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-196, - strand, RNAz p=0.963942

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-397, gnl|bosTau2|chr7 (7731962-7732364)
               

               
               1-397, gnl|canFam2|chr20 (51434050-51433735)
               

               
               1-397, gnl|echTel1|scaffold_266310 (529-204)
               

               
               1-397, gnl|hg17|chr19 (14057095-14057416)
               

               
               1-397, gnl|Hg17|chr19 (14057535-14057150)
               

               
               1-397, gnl|loxAfr1|scaffold_76175 (3988-4313)
               

               
               1-397, gnl|mm7|chr8 (82579676-82579361)
               

               
               1-397, gnl|Mm7|chr8 (82579252-82579619)
               

               
               1-397, gnl|monDom2|scaffold_159 (1325891-1326209)
               

               
               1-397, gnl|panTro1|chr20 (14691560-14691881)
               

               
               1-397, gnl|rheMac2|chr19 (13773555-13773876)
               

               
               1-397, gnl|rn3|chr19 (25840464-25840779)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-397, gnl|bosTau2|chr7 (7731962-7732364)
               

               
               1-397, gnl|canFam2|chr20 (51434050-51433735)
               

               
               1-397, gnl|echTel1|scaffold_266310 (529-204)
               

               
               1-397, gnl|hg17|chr19 (14057095-14057416)
               

               
               1-397, gnl|Hg17|chr19 (14057535-14057150)
               

               
               1-397, gnl|loxAfr1|scaffold_76175 (3988-4313)
               

               
               1-397, gnl|mm7|chr8 (82579676-82579361)
               

               
               1-397, gnl|Mm7|chr8 (82579252-82579619)
               

               
               1-397, gnl|monDom2|scaffold_159 (1325891-1326209)
               

               
               1-397, gnl|panTro1|chr20 (14691560-14691881)
               

               
               1-397, gnl|rheMac2|chr19 (13773555-13773876)
               

               
               1-397, gnl|rn3|chr19 (25840464-25840779)

	1-397, gnl\|bosTau2\|chr7 (7731962-7732364)
	1-397, gnl\|canFam2\|chr20 (51434050-51433735)
	1-397, gnl\|echTel1\|scaffold_266310 (529-204)
	1-397, gnl\|hg17\|chr19 (14057095-14057416)
	1-397, gnl\|Hg17\|chr19 (14057535-14057150)
	1-397, gnl\|loxAfr1\|scaffold_76175 (3988-4313)
	1-397, gnl\|mm7\|chr8 (82579676-82579361)
	1-397, gnl\|Mm7\|chr8 (82579252-82579619)
	1-397, gnl\|monDom2\|scaffold_159 (1325891-1326209)
	1-397, gnl\|panTro1\|chr20 (14691560-14691881)
	1-397, gnl\|rheMac2\|chr19 (13773555-13773876)
	1-397, gnl\|rn3\|chr19 (25840464-25840779)