Non-Coding RNA Search

Pig2-37F11

Sequence:


               
               GCGGACGCGTGGGGTCCCTCAGGCCTGGAGAGCCCCTCTCATGCTCTGCGGGCAGATGCC
CCCCCTCACGCCAGCTCTGCAGCCACCATCTGTGTCACANCTGGCGGAGGGCCACCGCTG
TGACCGGGCCTTGGAGATCCTCCTGCACCCCAGTGGTGTGGTTCCTGCAGCGACGCTTCC
ACAAGGACATCCTGCTGAACCCCGTGCTGGTGCTGAGCTTCTGCCCGGACTTGAGCTCCA
AGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGGTCCCTCAGGCCTGGAGAGCCCCTCTCATGCTCTGCGGGCAGATGCC
CCCCCTCACGCCAGCTCTGCAGCCACCATCTGTGTCACANCTGGCGGAGGGCCACCGCTG
TGACCGGGCCTTGGAGATCCTCCTGCACCCCAGTGGTGTGGTTCCTGCAGCGACGCTTCC
ACAAGGACATCCTGCTGAACCCCGTGCTGGTGCTGAGCTTCTGCCCGGACTTGAGCTCCA
AGCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               15-133, + strand, RNAz p=0.60356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-133, + strand, RNAz p=0.60356

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               15-158, gnl|bosTau2|chr1 (51234796-51234654)
               

               
               15-158, gnl|canFam2|chr34 (20135140-20135255)
               

               
               15-158, gnl|danRer3|chr2 (40031311-40031427)
               

               
               15-158, gnl|dasNov1|scaffold_6962 (18852-18737)
               

               
               15-158, gnl|echTel1|scaffold_318235 (11099-10983)
               

               
               15-158, gnl|fr1|chrUn (136036072-136035958)
               

               
               15-158, gnl|galGal2|chr9 (15208144-15208259)
               

               
               15-158, gnl|hg17|chr3 (185434748-185434865)
               

               
               15-158, gnl|Hg17|chr3 (185434748-185434890)
               

               
               15-158, gnl|mm7|chr16 (20145335-20145450)
               

               
               15-158, gnl|Mm7|chr16 (20145333-20145475)
               

               
               15-158, gnl|oryCun1|scaffold_201926 (80874-80989)
               

               
               15-158, gnl|panTro1|chr2 (189387154-189387268)
               

               
               15-158, gnl|rheMac2|chr2 (102436268-102436151)
               

               
               15-158, gnl|rn3|chr11 (82603965-82603850)
               

               
               15-158, gnl|tetNig1|chr15 (5076371-5076488)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-158, gnl|bosTau2|chr1 (51234796-51234654)
               

               
               15-158, gnl|canFam2|chr34 (20135140-20135255)
               

               
               15-158, gnl|danRer3|chr2 (40031311-40031427)
               

               
               15-158, gnl|dasNov1|scaffold_6962 (18852-18737)
               

               
               15-158, gnl|echTel1|scaffold_318235 (11099-10983)
               

               
               15-158, gnl|fr1|chrUn (136036072-136035958)
               

               
               15-158, gnl|galGal2|chr9 (15208144-15208259)
               

               
               15-158, gnl|hg17|chr3 (185434748-185434865)
               

               
               15-158, gnl|Hg17|chr3 (185434748-185434890)
               

               
               15-158, gnl|mm7|chr16 (20145335-20145450)
               

               
               15-158, gnl|Mm7|chr16 (20145333-20145475)
               

               
               15-158, gnl|oryCun1|scaffold_201926 (80874-80989)
               

               
               15-158, gnl|panTro1|chr2 (189387154-189387268)
               

               
               15-158, gnl|rheMac2|chr2 (102436268-102436151)
               

               
               15-158, gnl|rn3|chr11 (82603965-82603850)
               

               
               15-158, gnl|tetNig1|chr15 (5076371-5076488)

	15-158, gnl\|bosTau2\|chr1 (51234796-51234654)
	15-158, gnl\|canFam2\|chr34 (20135140-20135255)
	15-158, gnl\|danRer3\|chr2 (40031311-40031427)
	15-158, gnl\|dasNov1\|scaffold_6962 (18852-18737)
	15-158, gnl\|echTel1\|scaffold_318235 (11099-10983)
	15-158, gnl\|fr1\|chrUn (136036072-136035958)
	15-158, gnl\|galGal2\|chr9 (15208144-15208259)
	15-158, gnl\|hg17\|chr3 (185434748-185434865)
	15-158, gnl\|Hg17\|chr3 (185434748-185434890)
	15-158, gnl\|mm7\|chr16 (20145335-20145450)
	15-158, gnl\|Mm7\|chr16 (20145333-20145475)
	15-158, gnl\|oryCun1\|scaffold_201926 (80874-80989)
	15-158, gnl\|panTro1\|chr2 (189387154-189387268)
	15-158, gnl\|rheMac2\|chr2 (102436268-102436151)
	15-158, gnl\|rn3\|chr11 (82603965-82603850)
	15-158, gnl\|tetNig1\|chr15 (5076371-5076488)