Non-Coding RNA Search

Pig2-39E10

Sequence:


               
               GGGGCCCCAAACCCCTCTGTACAGTCCATAGGAAAAAGTCGGAATGCTCTCAATGGCCCA
TCCCAGCCTGGGACAGGTCCCCTCTTCCCTCTCTCCCAAGGCAGGCCAGGAAGGTTACTC
TCCTGACAGCCACACATGAGGGGAGTTTAGCCCCAGGTCGCCCCCAAACCCCAGTCCCGC
ATGCAGGTGCCCTCGCTCCGCCCTATCGGTCCCTGCCCCTGCCCCTCACACAAGACAGCC
CTGCTGTGGCCGGGCCGGAGAGTGGAGCAGAAAGGGGACCCCGGAGGCGAGCGAGGAGGA
CGAGGCGGGGCAGCCGCCGCTGCTGTCGGCTAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCCCCAAACCCCTCTGTACAGTCCATAGGAAAAAGTCGGAATGCTCTCAATGGCCCA
TCCCAGCCTGGGACAGGTCCCCTCTTCCCTCTCTCCCAAGGCAGGCCAGGAAGGTTACTC
TCCTGACAGCCACACATGAGGGGAGTTTAGCCCCAGGTCGCCCCCAAACCCCAGTCCCGC
ATGCAGGTGCCCTCGCTCCGCCCTATCGGTCCCTGCCCCTGCCCCTCACACAAGACAGCC
CTGCTGTGGCCGGGCCGGAGAGTGGAGCAGAAAGGGGACCCCGGAGGCGAGCGAGGAGGA
CGAGGCGGGGCAGCCGCCGCTGCTGTCGGCTAAACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-154, - strand, RNAz p=0.74603

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-154, - strand, RNAz p=0.74603

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               83-290, - strand, RNAmicro p=0.999712
               

               
               70-166, + strand, RNAmicro p=0.963235

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               83-290, - strand, RNAmicro p=0.999712
               

               
               70-166, + strand, RNAmicro p=0.963235

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-336, gnl|bosTau2|chr7 (9296696-9297029)
               

               
               3-336, gnl|Hg17|chr19 (13067211-13067528)
               

               
               3-336, gnl|Mm7|chr8 (83292782-83292489)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-336, gnl|bosTau2|chr7 (9296696-9297029)
               

               
               3-336, gnl|Hg17|chr19 (13067211-13067528)
               

               
               3-336, gnl|Mm7|chr8 (83292782-83292489)

	83-290, - strand, RNAmicro p=0.999712
	70-166, + strand, RNAmicro p=0.963235

	3-336, gnl\|bosTau2\|chr7 (9296696-9297029)
	3-336, gnl\|Hg17\|chr19 (13067211-13067528)
	3-336, gnl\|Mm7\|chr8 (83292782-83292489)