Non-Coding RNA Search

Pig2-3B18

Sequence:


               
               AAATGAATCCTGAATATCAGGAAAGAGGACCCTGTGTCCTCAGGTCCAGGGGGTCCCCCA
TCCTCAGTAAAAGCTGAGGCAGTGACTGGGGGGAAAGCAGATCTACTACCTTTGGAAAAG
TCAGGTCCTGTGGCCCCTGGAAAGGTGGGTCCTGTGACCTCGGGGAAGGCTGATTCCCCC
ACCTTGGGCAAAGTGGACCCTGTGAGCAAAGGAAAGACAGAAACTGTTGCCCCTGGAGAC
AAGGACCCCGTGTCGGCAGGAAAAGTGGCCCCCACTACCCTAGGGGGAACAGTCCCAGCA
TCCTTGGGAAAAGCAGAAGCTGTCCCAGAGGGAAAGGTGAATCCCCTGCCTCTAGAGAAG
GACAATCCTATGAACTCCACGAAGCTGGATCCCGGGGCCTCAGGGAAAGCAGAACCCAAG
TCTGAGGGCAAAGCAGAAACAAAGCCCCCTGGGCAGGAAGGCACTGCATCATCAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGAATCCTGAATATCAGGAAAGAGGACCCTGTGTCCTCAGGTCCAGGGGGTCCCCCA
TCCTCAGTAAAAGCTGAGGCAGTGACTGGGGGGAAAGCAGATCTACTACCTTTGGAAAAG
TCAGGTCCTGTGGCCCCTGGAAAGGTGGGTCCTGTGACCTCGGGGAAGGCTGATTCCCCC
ACCTTGGGCAAAGTGGACCCTGTGAGCAAAGGAAAGACAGAAACTGTTGCCCCTGGAGAC
AAGGACCCCGTGTCGGCAGGAAAAGTGGCCCCCACTACCCTAGGGGGAACAGTCCCAGCA
TCCTTGGGAAAAGCAGAAGCTGTCCCAGAGGGAAAGGTGAATCCCCTGCCTCTAGAGAAG
GACAATCCTATGAACTCCACGAAGCTGGATCCCGGGGCCTCAGGGAAAGCAGAACCCAAG
TCTGAGGGCAAAGCAGAAACAAAGCCCCCTGGGCAGGAAGGCACTGCATCATCAGGAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-254, - strand, RNAz p=0.999872
               

               
               295-430, - strand, RNAz p=0.999942

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-254, - strand, RNAz p=0.999872
               

               
               295-430, - strand, RNAz p=0.999942

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               231-369, - strand, RNAmicro p=0.993452

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               231-369, - strand, RNAmicro p=0.993452

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-479, gnl|bosTau2|chr7 (26233381-26232901)
               

               
               1-479, gnl|Hg17|chr5 (175958009-175957484)
               

               
               1-479, gnl|Mm7|chr13 (53824918-53824438)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr7 (26233381-26232901)
               

               
               1-479, gnl|Hg17|chr5 (175958009-175957484)
               

               
               1-479, gnl|Mm7|chr13 (53824918-53824438)

	1-254, - strand, RNAz p=0.999872
	295-430, - strand, RNAz p=0.999942

	1-479, gnl\|bosTau2\|chr7 (26233381-26232901)
	1-479, gnl\|Hg17\|chr5 (175958009-175957484)
	1-479, gnl\|Mm7\|chr13 (53824918-53824438)