Pig2-3B22
|
GGTCCCGAACCCACAATGGAGGGGGACGTGTTGGACACACTAGAGGCGCTGGGGTACAAG
GGACCACTGTTAGAAGAGCAAGCCCTTATCAGGGCAGCAGAGGGTGGACTTGCTTCACCT
GAGTTTTCAGAGCTCTGTGTTTGGTTAGGCTCTCAGATAAAATCATTGTGCAACTTGGAA
GAAAGTATCACTTCAGCTGGGAGAGATGATCTAGAAAGCTTCCAGCTTGAGATAAGTGGT
TTTTTAAAGGAAATGGTGTGTCCATATTCTGTACTCATATCAGGAGATATTAAAGACCGT
TTAAAAAAGAAGGACGACTGTTTGAAACTTCTACTATTTTTAAGTACAGAGCTTCAAGCT
TTGCAGATAATACAGAACAAGAAATGCAAAAATTCTCAATTAGATAAAAATAGTGAAATT
TATCAGGAAGTTCAAGCTATCTGTGATNACCCTTGGTGTTCCCAAGTCAACAACTTCTGA
CATTCCACTTATGCTAAGCCAAGTGGAATCAAAGGTGAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTCCCGAACCCACAATGGAGGGGGACGTGTTGGACACACTAGAGGCGCTGGGGTACAAG
GGACCACTGTTAGAAGAGCAAGCCCTTATCAGGGCAGCAGAGGGTGGACTTGCTTCACCT
GAGTTTTCAGAGCTCTGTGTTTGGTTAGGCTCTCAGATAAAATCATTGTGCAACTTGGAA
GAAAGTATCACTTCAGCTGGGAGAGATGATCTAGAAAGCTTCCAGCTTGAGATAAGTGGT
TTTTTAAAGGAAATGGTGTGTCCATATTCTGTACTCATATCAGGAGATATTAAAGACCGT
TTAAAAAAGAAGGACGACTGTTTGAAACTTCTACTATTTTTAAGTACAGAGCTTCAAGCT
TTGCAGATAATACAGAACAAGAAATGCAAAAATTCTCAATTAGATAAAAATAGTGAAATT
TATCAGGAAGTTCAAGCTATCTGTGATNACCCTTGGTGTTCCCAAGTCAACAACTTCTGA
CATTCCACTTATGCTAAGCCAAGTGGAATCAAAGGTGAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
53-200, gnl|bosTau2|chr10 (22598330-22598477) |
|
53-200, gnl|Hg17|chr15 (36543524-36543671) |
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53-200, gnl|Mm7|chr2 (116998481-116998628) |
| |
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329-516, gnl|bosTau2|chr10 (22605575-22605761) |
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329-516, gnl|canFam2|chr30 (8804787-8805037) |
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329-516, gnl|dasNov1|scaffold_46950 (8116-7850) |
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329-516, gnl|echTel1|scaffold_301857 (82377-82115) |
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329-516, gnl|galGal2|chr5 (27598040-27597791) |
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329-516, gnl|hg17|chr15 (36549661-36549915) |
|
329-516, gnl|Hg17|chr15 (36549714-36549900) |
|
329-516, gnl|loxAfr1|scaffold_20687 (37073-36808) |
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329-516, gnl|mm7|chr2 (117000962-117001224) |
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329-516, gnl|Mm7|chr2 (117001017-117001203) |
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329-516, gnl|monDom2|scaffold_12 (4978283-4978035) |
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329-516, gnl|oryCun1|scaffold_204886 (1109-1366) |
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329-516, gnl|panTro1|chr16 (36415334-36415588) |
|
329-516, gnl|rheMac2|chr7 (16785207-16785460) |
|
329-516, gnl|rn3|chr3 (103248739-103249000) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
53-200, gnl|bosTau2|chr10 (22598330-22598477) |
|
53-200, gnl|Hg17|chr15 (36543524-36543671) |
|
53-200, gnl|Mm7|chr2 (116998481-116998628) |
| |
|
329-516, gnl|bosTau2|chr10 (22605575-22605761) |
|
329-516, gnl|canFam2|chr30 (8804787-8805037) |
|
329-516, gnl|dasNov1|scaffold_46950 (8116-7850) |
|
329-516, gnl|echTel1|scaffold_301857 (82377-82115) |
|
329-516, gnl|galGal2|chr5 (27598040-27597791) |
|
329-516, gnl|hg17|chr15 (36549661-36549915) |
|
329-516, gnl|Hg17|chr15 (36549714-36549900) |
|
329-516, gnl|loxAfr1|scaffold_20687 (37073-36808) |
|
329-516, gnl|mm7|chr2 (117000962-117001224) |
|
329-516, gnl|Mm7|chr2 (117001017-117001203) |
|
329-516, gnl|monDom2|scaffold_12 (4978283-4978035) |
|
329-516, gnl|oryCun1|scaffold_204886 (1109-1366) |
|
329-516, gnl|panTro1|chr16 (36415334-36415588) |
|
329-516, gnl|rheMac2|chr7 (16785207-16785460) |
|
329-516, gnl|rn3|chr3 (103248739-103249000) |
