Non-Coding RNA Search

Pig2-3G22

Sequence:


               
               ACAAATATATATATATATATAAATAAATGATTAAAAAAAAAAAGGAAAGTATGGAATCAG
ATCTGTTTGTTCAGTGTGTGCATTTGAGACGATGAAGGGAAACGTTAAATGAAACCAAAT
CTATCCTCCTGTCAGTGTGAGGCGGGGAAGGAAAATAAACTTCCCCTCCTAGTGTAGACA
AAGGCAGAGTGACAGAGCAAAGCCGGCTCCTTCACATGCTGACCCCTCCGTCGCCAAGAG
CGGGGTCCAGAGGCCCTCAGAGCTTTCCGGACGTGTATCCAGAGGGGACATCAAGGCAAC
GCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAATATATATATATATATAAATAAATGATTAAAAAAAAAAAGGAAAGTATGGAATCAG
ATCTGTTTGTTCAGTGTGTGCATTTGAGACGATGAAGGGAAACGTTAAATGAAACCAAAT
CTATCCTCCTGTCAGTGTGAGGCGGGGAAGGAAAATAAACTTCCCCTCCTAGTGTAGACA
AAGGCAGAGTGACAGAGCAAAGCCGGCTCCTTCACATGCTGACCCCTCCGTCGCCAAGAG
CGGGGTCCAGAGGCCCTCAGAGCTTTCCGGACGTGTATCCAGAGGGGACATCAAGGCAAC
GCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               160-269, - strand, RNAz p=0.761963

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-269, - strand, RNAz p=0.761963

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               44-303, gnl|bosTau2|chr3 (53975741-53976003)
               

               
               44-303, gnl|canFam2|chr5 (49090752-49090070)
               

               
               44-303, gnl|dasNov1|scaffold_75971 (8713-9383)
               

               
               44-303, gnl|echTel1|scaffold_294817 (141341-140656)
               

               
               44-303, gnl|hg17|chr1 (64279717-64280370)
               

               
               44-303, gnl|Hg17|chr1 (64279941-64280210)
               

               
               44-303, gnl|loxAfr1|scaffold_756 (102088-101402)
               

               
               44-303, gnl|mm7|chr4 (99753853-99754421)
               

               
               44-303, gnl|Mm7|chr4 (99754032-99754283)
               

               
               44-303, gnl|panTro1|chr1 (62619280-62619933)
               

               
               44-303, gnl|rheMac2|chr1 (66884939-66885594)
               

               
               44-303, gnl|rn3|chr5 (121038644-121039248)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-303, gnl|bosTau2|chr3 (53975741-53976003)
               

               
               44-303, gnl|canFam2|chr5 (49090752-49090070)
               

               
               44-303, gnl|dasNov1|scaffold_75971 (8713-9383)
               

               
               44-303, gnl|echTel1|scaffold_294817 (141341-140656)
               

               
               44-303, gnl|hg17|chr1 (64279717-64280370)
               

               
               44-303, gnl|Hg17|chr1 (64279941-64280210)
               

               
               44-303, gnl|loxAfr1|scaffold_756 (102088-101402)
               

               
               44-303, gnl|mm7|chr4 (99753853-99754421)
               

               
               44-303, gnl|Mm7|chr4 (99754032-99754283)
               

               
               44-303, gnl|panTro1|chr1 (62619280-62619933)
               

               
               44-303, gnl|rheMac2|chr1 (66884939-66885594)
               

               
               44-303, gnl|rn3|chr5 (121038644-121039248)

	44-303, gnl\|bosTau2\|chr3 (53975741-53976003)
	44-303, gnl\|canFam2\|chr5 (49090752-49090070)
	44-303, gnl\|dasNov1\|scaffold_75971 (8713-9383)
	44-303, gnl\|echTel1\|scaffold_294817 (141341-140656)
	44-303, gnl\|hg17\|chr1 (64279717-64280370)
	44-303, gnl\|Hg17\|chr1 (64279941-64280210)
	44-303, gnl\|loxAfr1\|scaffold_756 (102088-101402)
	44-303, gnl\|mm7\|chr4 (99753853-99754421)
	44-303, gnl\|Mm7\|chr4 (99754032-99754283)
	44-303, gnl\|panTro1\|chr1 (62619280-62619933)
	44-303, gnl\|rheMac2\|chr1 (66884939-66885594)
	44-303, gnl\|rn3\|chr5 (121038644-121039248)