Non-Coding RNA Search

Pig2-3L13

Sequence:


               
               AAAAATATGAGAAGAAGAGATGGTATGTCCCCCCAGACCAAGTCAAGGGGCCCGAGTATA
CCAAAGGCAGTGCCTCCACCCCAGTCCAGGGCTCCATCCCGGAAGGGAAGCCCCTGCGGA
CACTTCTGGGAGACCCCGTGCCATCTCTCTCAGCTGCTGCCTCCACCTCCAGCCAGGCTG
TCAGTCAGTCTCAGCCTCGGACGTCCCAGCCCCGGAGCTCTCAGCCAGCTCCCCACTCCT
CAGTCAAAAAAGCCAGTACGGACCTGTTGGCTGACATCGGCGGAGACCCTTTCGCTGCTC
CCCAGGTGGCACCAGCTTTTGCTGCATTCCCAGCCTTTGGGGGCCAAACGCCGTCCCACG
GGGGCTTTGCCAACTTCGATGCCTTTGGCAGCAGCGCCAGCTCCTCTGCGTTTGGAAGCA
TTCCTCCTGCTGGCCAAGCCCCGTTCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATATGAGAAGAAGAGATGGTATGTCCCCCCAGACCAAGTCAAGGGGCCCGAGTATA
CCAAAGGCAGTGCCTCCACCCCAGTCCAGGGCTCCATCCCGGAAGGGAAGCCCCTGCGGA
CACTTCTGGGAGACCCCGTGCCATCTCTCTCAGCTGCTGCCTCCACCTCCAGCCAGGCTG
TCAGTCAGTCTCAGCCTCGGACGTCCCAGCCCCGGAGCTCTCAGCCAGCTCCCCACTCCT
CAGTCAAAAAAGCCAGTACGGACCTGTTGGCTGACATCGGCGGAGACCCTTTCGCTGCTC
CCCAGGTGGCACCAGCTTTTGCTGCATTCCCAGCCTTTGGGGGCCAAACGCCGTCCCACG
GGGGCTTTGCCAACTTCGATGCCTTTGGCAGCAGCGCCAGCTCCTCTGCGTTTGGAAGCA
TTCCTCCTGCTGGCCAAGCCCCGTTCCCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               22-177, - strand, RNAz p=0.904252
               

               
               225-343, - strand, RNAz p=0.825446

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               22-177, - strand, RNAz p=0.904252
               

               
               225-343, - strand, RNAz p=0.825446

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               22-188, gnl|bosTau2|chr25 (32410323-32410158)
               

               
               22-188, gnl|Hg17|chr7 (99795620-99795785)
               

               
               22-188, gnl|Mm7|chr5 (136582375-136582207)
               


               
               191-343, gnl|bosTau2|chr25 (32409599-32409447)
               

               
               191-343, gnl|Hg17|chr7 (99796375-99796533)
               

               
               191-343, gnl|Mm7|chr5 (136581598-136581437)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-188, gnl|bosTau2|chr25 (32410323-32410158)
               

               
               22-188, gnl|Hg17|chr7 (99795620-99795785)
               

               
               22-188, gnl|Mm7|chr5 (136582375-136582207)
               


               
               191-343, gnl|bosTau2|chr25 (32409599-32409447)
               

               
               191-343, gnl|Hg17|chr7 (99796375-99796533)
               

               
               191-343, gnl|Mm7|chr5 (136581598-136581437)

	22-177, - strand, RNAz p=0.904252
	225-343, - strand, RNAz p=0.825446

	22-188, gnl\|bosTau2\|chr25 (32410323-32410158)
	22-188, gnl\|Hg17\|chr7 (99795620-99795785)
	22-188, gnl\|Mm7\|chr5 (136582375-136582207)

	191-343, gnl\|bosTau2\|chr25 (32409599-32409447)
	191-343, gnl\|Hg17\|chr7 (99796375-99796533)
	191-343, gnl\|Mm7\|chr5 (136581598-136581437)