Non-Coding RNA Search

Pig2-3M22

Sequence:


               
               GAGGCTATGGAGGCAGTGGCTGATGGGCCACTCTCTGCAGGAGCCCCTCAGCCATGGGCC
CTCCAGGGCTCTGCTGTGAGGGCCCGAGGTGCAGGGTTCACAGACAGGGTTTCCCACCAG
CCATGTGCACCAGCTCAATTTGGGGGAAGTGCAGTAAGGAGCCAAGAGGTCCCCAGGGGA
GTGAGGAAGGAGAAATTGGAAGGGTGCAGCCCACTCTTGACTTCCCCCTCCCTCCCTACT
CTTCCTCCTCCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCTATGGAGGCAGTGGCTGATGGGCCACTCTCTGCAGGAGCCCCTCAGCCATGGGCC
CTCCAGGGCTCTGCTGTGAGGGCCCGAGGTGCAGGGTTCACAGACAGGGTTTCCCACCAG
CCATGTGCACCAGCTCAATTTGGGGGAAGTGCAGTAAGGAGCCAAGAGGTCCCCAGGGGA
GTGAGGAAGGAGAAATTGGAAGGGTGCAGCCCACTCTTGACTTCCCCCTCCCTCCCTACT
CTTCCTCCTCCCTGG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               7-112, - strand, RNAz p=0.993854
               

               
               123-255, - strand, RNAz p=0.993192
               

               
               149-255, + strand, RNAz p=0.826831

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-112, - strand, RNAz p=0.993854
               

               
               123-255, - strand, RNAz p=0.993192
               

               
               149-255, + strand, RNAz p=0.826831

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               7-145, - strand, RNAmicro p=0.999941
               

               
               16-137, + strand, RNAmicro p=0.999923
               

               
               193-273, - strand, RNAmicro p=0.999218

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               7-145, - strand, RNAmicro p=0.999941
               

               
               16-137, + strand, RNAmicro p=0.999923
               

               
               193-273, - strand, RNAmicro p=0.999218

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_014921, -
               

               
               5' of NM_014921, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014921, -
               

               
               5' of NM_014921, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               7-255, gnl|bosTau2|chr7 (7650594-7650851)
               

               
               7-255, gnl|canFam2|chr20 (51382525-51382206)
               

               
               7-255, gnl|hg17|chr19 (14122322-14122637)
               

               
               7-255, gnl|Hg17|chr19 (14122604-14122344)
               

               
               7-255, gnl|loxAfr1|scaffold_53062 (79-398)
               

               
               7-255, gnl|mm7|chr8 (82518017-82517727)
               

               
               7-255, gnl|Mm7|chr8 (82517756-82518019)
               

               
               7-255, gnl|monDom2|scaffold_159 (1385014-1385282)
               

               
               7-255, gnl|panTro1|chr20 (14757563-14757879)
               

               
               7-255, gnl|rheMac2|chr19 (13839947-13840263)
               

               
               7-255, gnl|rn3|chr19 (25896525-25896815)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-255, gnl|bosTau2|chr7 (7650594-7650851)
               

               
               7-255, gnl|canFam2|chr20 (51382525-51382206)
               

               
               7-255, gnl|hg17|chr19 (14122322-14122637)
               

               
               7-255, gnl|Hg17|chr19 (14122604-14122344)
               

               
               7-255, gnl|loxAfr1|scaffold_53062 (79-398)
               

               
               7-255, gnl|mm7|chr8 (82518017-82517727)
               

               
               7-255, gnl|Mm7|chr8 (82517756-82518019)
               

               
               7-255, gnl|monDom2|scaffold_159 (1385014-1385282)
               

               
               7-255, gnl|panTro1|chr20 (14757563-14757879)
               

               
               7-255, gnl|rheMac2|chr19 (13839947-13840263)
               

               
               7-255, gnl|rn3|chr19 (25896525-25896815)

	7-112, - strand, RNAz p=0.993854
	123-255, - strand, RNAz p=0.993192
	149-255, + strand, RNAz p=0.826831

	7-145, - strand, RNAmicro p=0.999941
	16-137, + strand, RNAmicro p=0.999923
	193-273, - strand, RNAmicro p=0.999218

	7-255, gnl\|bosTau2\|chr7 (7650594-7650851)
	7-255, gnl\|canFam2\|chr20 (51382525-51382206)
	7-255, gnl\|hg17\|chr19 (14122322-14122637)
	7-255, gnl\|Hg17\|chr19 (14122604-14122344)
	7-255, gnl\|loxAfr1\|scaffold_53062 (79-398)
	7-255, gnl\|mm7\|chr8 (82518017-82517727)
	7-255, gnl\|Mm7\|chr8 (82517756-82518019)
	7-255, gnl\|monDom2\|scaffold_159 (1385014-1385282)
	7-255, gnl\|panTro1\|chr20 (14757563-14757879)
	7-255, gnl\|rheMac2\|chr19 (13839947-13840263)
	7-255, gnl\|rn3\|chr19 (25896525-25896815)