Non-Coding RNA Search

Pig2-3O04

Sequence:


               
               ATACCTAATATTTCTTGGCAAATTCTATTTGGTGTTGTGGTACAAACACACAGTGTGAAA
AAATTTCAAGGGATACGTAAGTTTTCTGGACAGTTGCAGGCCCCTTTCTTTTTGAAAGTT
TAGAGCTCCAATACCCTCAATTCTACTGGCAGAATTAGGATGGACTTAGAGGGTCCTAAA
CGTGACCGATTCACTAAGGCGGGGGGCTACAGCTTGCAGCAACGTGCTCGGCAACTTAAT
CCTACGCTAAAAGAGGGCAGAGAGCGAAAAAGAATGGAATACAAACTCTCCCGACATTCG
TAGTTACTTTCAAGGTGGATTGTGTATTTTAAGGCTGATGGGAACGTCTGGTTTGGGGAG
CAAAAAGAAGAGAAGACCAGCTCCCCTGCCCGGAGCCCGAGGGCCCTCGACACCCCCGCT
GCGCCTCCCCCCGCCTGGCCCGGCTTCGTCTTCAGCGAGTTGTGTTGCTTTTCCTCCCTA
GAAGCTCCCTCGTCCGCGTTCCACTTTTTTACCGTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCTAATATTTCTTGGCAAATTCTATTTGGTGTTGTGGTACAAACACACAGTGTGAAA
AAATTTCAAGGGATACGTAAGTTTTCTGGACAGTTGCAGGCCCCTTTCTTTTTGAAAGTT
TAGAGCTCCAATACCCTCAATTCTACTGGCAGAATTAGGATGGACTTAGAGGGTCCTAAA
CGTGACCGATTCACTAAGGCGGGGGGCTACAGCTTGCAGCAACGTGCTCGGCAACTTAAT
CCTACGCTAAAAGAGGGCAGAGAGCGAAAAAGAATGGAATACAAACTCTCCCGACATTCG
TAGTTACTTTCAAGGTGGATTGTGTATTTTAAGGCTGATGGGAACGTCTGGTTTGGGGAG
CAAAAAGAAGAGAAGACCAGCTCCCCTGCCCGGAGCCCGAGGGCCCTCGACACCCCCGCT
GCGCCTCCCCCCGCCTGGCCCGGCTTCGTCTTCAGCGAGTTGTGTTGCTTTTCCTCCCTA
GAAGCTCCCTCGTCCGCGTTCCACTTTTTTACCGTCCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               88-200, - strand, RNAz p=0.530993

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-200, - strand, RNAz p=0.530993

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-375, gnl|bosTau2|chr13 (11007131-11007505)
               

               
               1-375, gnl|canFam2|chr2 (14496142-14495601)
               

               
               1-375, gnl|echTel1|scaffold_301795 (13824-14341)
               

               
               1-375, gnl|hg17|chr10 (21853283-21853811)
               

               
               1-375, gnl|Hg17|chr10 (21853327-21853710)
               

               
               1-375, gnl|loxAfr1|scaffold_27779 (8769-8248)
               

               
               1-375, gnl|mm7|chr2 (18120064-18120630)
               

               
               1-375, gnl|Mm7|chr2 (18120114-18120530)
               

               
               1-375, gnl|monDom2|scaffold_7 (47443655-47443135)
               

               
               1-375, gnl|oryCun1|scaffold_117360 (8927-8407)
               

               
               1-375, gnl|panTro1|chr8 (22060809-22061336)
               

               
               1-375, gnl|rheMac2|chr9 (21735189-21735721)
               

               
               1-375, gnl|rn3|chr17 (92247953-92248481)
               

               
               1-375, gnl|xenTro1|scaffold_42 (3004707-3004202)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-375, gnl|bosTau2|chr13 (11007131-11007505)
               

               
               1-375, gnl|canFam2|chr2 (14496142-14495601)
               

               
               1-375, gnl|echTel1|scaffold_301795 (13824-14341)
               

               
               1-375, gnl|hg17|chr10 (21853283-21853811)
               

               
               1-375, gnl|Hg17|chr10 (21853327-21853710)
               

               
               1-375, gnl|loxAfr1|scaffold_27779 (8769-8248)
               

               
               1-375, gnl|mm7|chr2 (18120064-18120630)
               

               
               1-375, gnl|Mm7|chr2 (18120114-18120530)
               

               
               1-375, gnl|monDom2|scaffold_7 (47443655-47443135)
               

               
               1-375, gnl|oryCun1|scaffold_117360 (8927-8407)
               

               
               1-375, gnl|panTro1|chr8 (22060809-22061336)
               

               
               1-375, gnl|rheMac2|chr9 (21735189-21735721)
               

               
               1-375, gnl|rn3|chr17 (92247953-92248481)
               

               
               1-375, gnl|xenTro1|scaffold_42 (3004707-3004202)

	1-375, gnl\|bosTau2\|chr13 (11007131-11007505)
	1-375, gnl\|canFam2\|chr2 (14496142-14495601)
	1-375, gnl\|echTel1\|scaffold_301795 (13824-14341)
	1-375, gnl\|hg17\|chr10 (21853283-21853811)
	1-375, gnl\|Hg17\|chr10 (21853327-21853710)
	1-375, gnl\|loxAfr1\|scaffold_27779 (8769-8248)
	1-375, gnl\|mm7\|chr2 (18120064-18120630)
	1-375, gnl\|Mm7\|chr2 (18120114-18120530)
	1-375, gnl\|monDom2\|scaffold_7 (47443655-47443135)
	1-375, gnl\|oryCun1\|scaffold_117360 (8927-8407)
	1-375, gnl\|panTro1\|chr8 (22060809-22061336)
	1-375, gnl\|rheMac2\|chr9 (21735189-21735721)
	1-375, gnl\|rn3\|chr17 (92247953-92248481)
	1-375, gnl\|xenTro1\|scaffold_42 (3004707-3004202)