Non-Coding RNA Search

Pig2-3P06

Sequence:


               
               ATAAGCATGGCCTTGCTCCTGGTGTCCTTGCTGGCATTCCTGAGCTTGGGCTCAGGATGT
CATCATCGGATCTGTCACTGCTCTAACGGGGTTTTCCTCTGCCAGGAGAGCAAGGTGACA
GAGATTCCTCCCGACCTCCCCAGGAACGCGGTTGAACTGAGGTTTGTTCTCACCAAGCTT
C

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGCATGGCCTTGCTCCTGGTGTCCTTGCTGGCATTCCTGAGCTTGGGCTCAGGATGT
CATCATCGGATCTGTCACTGCTCTAACGGGGTTTTCCTCTGCCAGGAGAGCAAGGTGACA
GAGATTCCTCCCGACCTCCCCAGGAACGCGGTTGAACTGAGGTTTGTTCTCACCAAGCTT
C

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q4ZFZ2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q4ZFZ2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-121, + strand, RNAz p=0.99079
               

               
               37-145, - strand, RNAz p=0.987174

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-121, + strand, RNAz p=0.99079
               

               
               37-145, - strand, RNAz p=0.987174

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-159, gnl|bosTau2|chr11 (20185518-20185361)
               

               
               2-159, gnl|canFam2|chr10 (54062986-54063801)
               

               
               2-159, gnl|dasNov1|scaffold_2235 (120434-121268)
               

               
               2-159, gnl|echTel1|scaffold_314411 (14753-15538)
               

               
               2-159, gnl|hg17|chr2 (49292740-49293535)
               

               
               2-159, gnl|Hg17|chr2 (49293212-49293055)
               

               
               2-159, gnl|loxAfr1|scaffold_589 (121878-122714)
               

               
               2-159, gnl|mm7|chr17 (87507935-87508811)
               

               
               2-159, gnl|Mm7|chr17 (87508396-87508239)
               

               
               2-159, gnl|monDom2|scaffold_1 (9650069-9650901)
               

               
               2-159, gnl|oryCun1|scaffold_169527 (11554-12352)
               

               
               2-159, gnl|panTro1|chr12 (51366463-51367253)
               

               
               2-159, gnl|rheMac2|chr13 (49311413-49312200)
               

               
               2-159, gnl|rn3|chr6 (13160686-13161543)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-159, gnl|bosTau2|chr11 (20185518-20185361)
               

               
               2-159, gnl|canFam2|chr10 (54062986-54063801)
               

               
               2-159, gnl|dasNov1|scaffold_2235 (120434-121268)
               

               
               2-159, gnl|echTel1|scaffold_314411 (14753-15538)
               

               
               2-159, gnl|hg17|chr2 (49292740-49293535)
               

               
               2-159, gnl|Hg17|chr2 (49293212-49293055)
               

               
               2-159, gnl|loxAfr1|scaffold_589 (121878-122714)
               

               
               2-159, gnl|mm7|chr17 (87507935-87508811)
               

               
               2-159, gnl|Mm7|chr17 (87508396-87508239)
               

               
               2-159, gnl|monDom2|scaffold_1 (9650069-9650901)
               

               
               2-159, gnl|oryCun1|scaffold_169527 (11554-12352)
               

               
               2-159, gnl|panTro1|chr12 (51366463-51367253)
               

               
               2-159, gnl|rheMac2|chr13 (49311413-49312200)
               

               
               2-159, gnl|rn3|chr6 (13160686-13161543)

	2-121, + strand, RNAz p=0.99079
	37-145, - strand, RNAz p=0.987174

	2-159, gnl\|bosTau2\|chr11 (20185518-20185361)
	2-159, gnl\|canFam2\|chr10 (54062986-54063801)
	2-159, gnl\|dasNov1\|scaffold_2235 (120434-121268)
	2-159, gnl\|echTel1\|scaffold_314411 (14753-15538)
	2-159, gnl\|hg17\|chr2 (49292740-49293535)
	2-159, gnl\|Hg17\|chr2 (49293212-49293055)
	2-159, gnl\|loxAfr1\|scaffold_589 (121878-122714)
	2-159, gnl\|mm7\|chr17 (87507935-87508811)
	2-159, gnl\|Mm7\|chr17 (87508396-87508239)
	2-159, gnl\|monDom2\|scaffold_1 (9650069-9650901)
	2-159, gnl\|oryCun1\|scaffold_169527 (11554-12352)
	2-159, gnl\|panTro1\|chr12 (51366463-51367253)
	2-159, gnl\|rheMac2\|chr13 (49311413-49312200)
	2-159, gnl\|rn3\|chr6 (13160686-13161543)