Non-Coding RNA Search

Pig2-40B06

Sequence:


               
               GCCAAACAGTCTGAGGAAACATTTCCTCAAGAACAGCAGAAAGCACCCCCTGTTGTTGGT
GGCTTCAACAGCAATGGAGGAAGCAAAGTGTTAGGGCTCAAATATGAAGAAATTGACTGT
CTCATAAATGATGAACATACAATTAAAGGGAGACGAGAGGGGAATGAAGTCTTTCTTCCA
TTCTCCTGGGTAGAGAAATACTTTGATGTTTATGGAAAGGTGGTTCAGTACGATGGCTAT
GATAGGTTTGAATTCTCTCATAGCTATTCCAAAGTCTATACACAGAGAGCCCCTTATCAC
CCTGATGGTGTGTTTATGTCCTTTGAAGGCTACAATGTGGAAGTCCGAGACAGAGTCAAA
TGCATAAGTGGGGTTGAAGGTGTACCTTTGTCTACACAATGGGGACCTCAAGGCTATTTC
TACCCAATCCAGATTGCACAGTATGGATTAAGTCATTACAGTAAGAATCTAACTGAGAAA
CCCCCTCACATAGAAGTATATGAAACAGCAGAAGACAGGGACAAAAGTAACAAGCTCAGT
GACTGGACTGTGCCAAAGGGCTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAACAGTCTGAGGAAACATTTCCTCAAGAACAGCAGAAAGCACCCCCTGTTGTTGGT
GGCTTCAACAGCAATGGAGGAAGCAAAGTGTTAGGGCTCAAATATGAAGAAATTGACTGT
CTCATAAATGATGAACATACAATTAAAGGGAGACGAGAGGGGAATGAAGTCTTTCTTCCA
TTCTCCTGGGTAGAGAAATACTTTGATGTTTATGGAAAGGTGGTTCAGTACGATGGCTAT
GATAGGTTTGAATTCTCTCATAGCTATTCCAAAGTCTATACACAGAGAGCCCCTTATCAC
CCTGATGGTGTGTTTATGTCCTTTGAAGGCTACAATGTGGAAGTCCGAGACAGAGTCAAA
TGCATAAGTGGGGTTGAAGGTGTACCTTTGTCTACACAATGGGGACCTCAAGGCTATTTC
TACCCAATCCAGATTGCACAGTATGGATTAAGTCATTACAGTAAGAATCTAACTGAGAAA
CCCCCTCACATAGAAGTATATGAAACAGCAGAAGACAGGGACAAAAGTAACAAGCTCAGT
GACTGGACTGTGCCAAAGGGCTGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642335|ref|XP_510506.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642335|ref|XP_510506.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-116, + strand, RNAz p=0.858987

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, + strand, RNAz p=0.858987

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-395, gnl|bosTau2|chr10 (10443421-10443815)
               

               
               1-395, gnl|Hg17|chr15 (67335404-67335801)
               

               
               1-395, gnl|Mm7|chr9 (62097118-62096721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-395, gnl|bosTau2|chr10 (10443421-10443815)
               

               
               1-395, gnl|Hg17|chr15 (67335404-67335801)
               

               
               1-395, gnl|Mm7|chr9 (62097118-62096721)

	1-395, gnl\|bosTau2\|chr10 (10443421-10443815)
	1-395, gnl\|Hg17\|chr15 (67335404-67335801)
	1-395, gnl\|Mm7\|chr9 (62097118-62096721)