Non-Coding RNA Search

Pig2-40G03

Sequence:


               
               TCACCGTCGGGGACATGGATGAAGCCTTCCGGTCCATCAGGCTCATCAAAAGCGAGGCCG
TCTGGGAGAACATGGCGCGCATGTGCGTGAAGACCCAGAGGCTGGACGTCGCCAAGGTGT
GCCTGGGGCACATGGGCCACGCACGCGGAGCCCGGGCGCTGCGGGAGGCCGAGCGGGAGC
CGGAGCTGGAAGCCCGGGTGGCCGTGCTGGCCATACAGCTGGGCATGCTGGAGGAGGCGG
AGCAGCTGTACAAGAAATGCGGGCGCTATGACCTCCTCAACCGACTCCTCCAGGCCTCTG
GCCAGTGGCAGAGAGCCATCGAGGTGGCTGAGCGCCACGACCGCGTGCACCTGCGCACCA
CCTACTACAACTATGCCCGGCACCTGGAAGCCAACGCCGACTACAGCCTGGCCCTCAGCT
ACTACGAGAAGTCAGACACGCACCGCTTCGAGGTGCCGCGGATGCTGGCGGAGGACCTGC
AGTTCCTGGAGCGCTACGTCAACACGATGAAGGACAGGACCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCGTCGGGGACATGGATGAAGCCTTCCGGTCCATCAGGCTCATCAAAAGCGAGGCCG
TCTGGGAGAACATGGCGCGCATGTGCGTGAAGACCCAGAGGCTGGACGTCGCCAAGGTGT
GCCTGGGGCACATGGGCCACGCACGCGGAGCCCGGGCGCTGCGGGAGGCCGAGCGGGAGC
CGGAGCTGGAAGCCCGGGTGGCCGTGCTGGCCATACAGCTGGGCATGCTGGAGGAGGCGG
AGCAGCTGTACAAGAAATGCGGGCGCTATGACCTCCTCAACCGACTCCTCCAGGCCTCTG
GCCAGTGGCAGAGAGCCATCGAGGTGGCTGAGCGCCACGACCGCGTGCACCTGCGCACCA
CCTACTACAACTATGCCCGGCACCTGGAAGCCAACGCCGACTACAGCCTGGCCCTCAGCT
ACTACGAGAAGTCAGACACGCACCGCTTCGAGGTGCCGCGGATGCTGGCGGAGGACCTGC
AGTTCCTGGAGCGCTACGTCAACACGATGAAGGACAGGACCCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               113-231, - strand, RNAz p=0.522776

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-231, - strand, RNAz p=0.522776

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               42-231, gnl|bosTau2|chr25 (2745930-2746119)
               

               
               42-231, gnl|canFam2|chr6 (42336367-42336147)
               

               
               42-231, gnl|danRer3|chr24 (30580705-30580903)
               

               
               42-231, gnl|fr1|chrUn (22067136-22067339)
               

               
               42-231, gnl|galGal2|chr14 (20458978-20459174)
               

               
               42-231, gnl|hg17|chr16 (1516611-1516827)
               

               
               42-231, gnl|Hg17|chr16 (1516805-1516620)
               

               
               42-231, gnl|loxAfr1|scaffold_136805 (4603-4798)
               

               
               42-231, gnl|mm7|chr17 (23270123-23269902)
               

               
               42-231, gnl|Mm7|chr17 (23269922-23270112)
               

               
               42-231, gnl|monDom2|scaffold_5 (122470660-122470437)
               

               
               42-231, gnl|rheMac2|chr20 (1515644-1515860)
               

               
               42-231, gnl|rn3|chr10 (14336407-14336186)
               

               
               42-231, gnl|tetNig1|chr2 (4891256-4891049)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-231, gnl|bosTau2|chr25 (2745930-2746119)
               

               
               42-231, gnl|canFam2|chr6 (42336367-42336147)
               

               
               42-231, gnl|danRer3|chr24 (30580705-30580903)
               

               
               42-231, gnl|fr1|chrUn (22067136-22067339)
               

               
               42-231, gnl|galGal2|chr14 (20458978-20459174)
               

               
               42-231, gnl|hg17|chr16 (1516611-1516827)
               

               
               42-231, gnl|Hg17|chr16 (1516805-1516620)
               

               
               42-231, gnl|loxAfr1|scaffold_136805 (4603-4798)
               

               
               42-231, gnl|mm7|chr17 (23270123-23269902)
               

               
               42-231, gnl|Mm7|chr17 (23269922-23270112)
               

               
               42-231, gnl|monDom2|scaffold_5 (122470660-122470437)
               

               
               42-231, gnl|rheMac2|chr20 (1515644-1515860)
               

               
               42-231, gnl|rn3|chr10 (14336407-14336186)
               

               
               42-231, gnl|tetNig1|chr2 (4891256-4891049)

	42-231, gnl\|bosTau2\|chr25 (2745930-2746119)
	42-231, gnl\|canFam2\|chr6 (42336367-42336147)
	42-231, gnl\|danRer3\|chr24 (30580705-30580903)
	42-231, gnl\|fr1\|chrUn (22067136-22067339)
	42-231, gnl\|galGal2\|chr14 (20458978-20459174)
	42-231, gnl\|hg17\|chr16 (1516611-1516827)
	42-231, gnl\|Hg17\|chr16 (1516805-1516620)
	42-231, gnl\|loxAfr1\|scaffold_136805 (4603-4798)
	42-231, gnl\|mm7\|chr17 (23270123-23269902)
	42-231, gnl\|Mm7\|chr17 (23269922-23270112)
	42-231, gnl\|monDom2\|scaffold_5 (122470660-122470437)
	42-231, gnl\|rheMac2\|chr20 (1515644-1515860)
	42-231, gnl\|rn3\|chr10 (14336407-14336186)
	42-231, gnl\|tetNig1\|chr2 (4891256-4891049)