Non-Coding RNA Search

Pig2-41H15

Sequence:


               
               TAGAAAGTAACCTCCCTGAAGGCTTCCTTCCTAATTAATAAGGAGATTTTCACTTTCCCC
AAGGTACTTCCTGTGATGTACTGTAACCCTGGTTAAAAGCAAGCTGAAGCTAAGCTGACA
ATGGGTAAAGAAAAAGGTGTATAAGGCATGTCTACATCTAATTATATTTGGGATTCATTA
GTATTAATGGCCTCCCATGGCCTGTCACCCTATGTCCATTGTCAGTTTGTAATGTAAAAT
AATTCAAATGTCTGTATAATTGGATTTCTGCCAGCAGTATTCCATCCATCACTGTATTTC
TTCTCAAATATTGAGAATGCTGTCTTTTAAAAATGTTCATATGCATATTCATGTATATAA
TCAAAATGTGTGAAAACACCCCTTCATATGAAAAAAAATTAGCAGTCTTGTAAAGAATAA
CTTTAGCACAAATGGTGAGTTTATTTTAAAATAAACTTTGTAAATGTATGGACCTCTAAA
AATAAAAATAGTAAGATCTCTCAAATGTTTATTTTTCTTACCAAATATGACAGTTATCTG
CGAGTGGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAAAGTAACCTCCCTGAAGGCTTCCTTCCTAATTAATAAGGAGATTTTCACTTTCCCC
AAGGTACTTCCTGTGATGTACTGTAACCCTGGTTAAAAGCAAGCTGAAGCTAAGCTGACA
ATGGGTAAAGAAAAAGGTGTATAAGGCATGTCTACATCTAATTATATTTGGGATTCATTA
GTATTAATGGCCTCCCATGGCCTGTCACCCTATGTCCATTGTCAGTTTGTAATGTAAAAT
AATTCAAATGTCTGTATAATTGGATTTCTGCCAGCAGTATTCCATCCATCACTGTATTTC
TTCTCAAATATTGAGAATGCTGTCTTTTAAAAATGTTCATATGCATATTCATGTATATAA
TCAAAATGTGTGAAAACACCCCTTCATATGAAAAAAAATTAGCAGTCTTGTAAAGAATAA
CTTTAGCACAAATGGTGAGTTTATTTTAAAATAAACTTTGTAAATGTATGGACCTCTAAA
AATAAAAATAGTAAGATCTCTCAAATGTTTATTTTTCTTACCAAATATGACAGTTATCTG
CGAGTGGAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               250-359, - strand, RNAz p=0.992729

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               250-359, - strand, RNAz p=0.992729

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               95-536, gnl|bosTau2|chr9 (5066209-5066657)
               

               
               95-536, gnl|canFam2|chr12 (37892217-37892747)
               

               
               95-536, gnl|dasNov1|scaffold_123863 (7540-7023)
               

               
               95-536, gnl|echTel1|scaffold_288172 (834-301)
               

               
               95-536, gnl|hg17|chr6 (73412447-73412994)
               

               
               95-536, gnl|Hg17|chr6 (73412449-73412899)
               

               
               95-536, gnl|loxAfr1|scaffold_69107 (9882-10414)
               

               
               95-536, gnl|mm7|chr1 (22143419-22142977)
               

               
               95-536, gnl|Mm7|chr1 (22143423-22143062)
               

               
               95-536, gnl|panTro1|chr5 (74559327-74559872)
               

               
               95-536, gnl|rheMac2|chr4 (68899627-68900172)
               

               
               95-536, gnl|rn3|chr9 (20755176-20754681)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-536, gnl|bosTau2|chr9 (5066209-5066657)
               

               
               95-536, gnl|canFam2|chr12 (37892217-37892747)
               

               
               95-536, gnl|dasNov1|scaffold_123863 (7540-7023)
               

               
               95-536, gnl|echTel1|scaffold_288172 (834-301)
               

               
               95-536, gnl|hg17|chr6 (73412447-73412994)
               

               
               95-536, gnl|Hg17|chr6 (73412449-73412899)
               

               
               95-536, gnl|loxAfr1|scaffold_69107 (9882-10414)
               

               
               95-536, gnl|mm7|chr1 (22143419-22142977)
               

               
               95-536, gnl|Mm7|chr1 (22143423-22143062)
               

               
               95-536, gnl|panTro1|chr5 (74559327-74559872)
               

               
               95-536, gnl|rheMac2|chr4 (68899627-68900172)
               

               
               95-536, gnl|rn3|chr9 (20755176-20754681)

	95-536, gnl\|bosTau2\|chr9 (5066209-5066657)
	95-536, gnl\|canFam2\|chr12 (37892217-37892747)
	95-536, gnl\|dasNov1\|scaffold_123863 (7540-7023)
	95-536, gnl\|echTel1\|scaffold_288172 (834-301)
	95-536, gnl\|hg17\|chr6 (73412447-73412994)
	95-536, gnl\|Hg17\|chr6 (73412449-73412899)
	95-536, gnl\|loxAfr1\|scaffold_69107 (9882-10414)
	95-536, gnl\|mm7\|chr1 (22143419-22142977)
	95-536, gnl\|Mm7\|chr1 (22143423-22143062)
	95-536, gnl\|panTro1\|chr5 (74559327-74559872)
	95-536, gnl\|rheMac2\|chr4 (68899627-68900172)
	95-536, gnl\|rn3\|chr9 (20755176-20754681)