Non-Coding RNA Search

Pig2-41L22

Sequence:


               
               GCTCGTCCATGCTGCTGTGCTCCAGCCCAGACAGGCCCCCACGCTGTCCGCTGGTCTGCG
TCCTCAGTCCCCCGCGGCCCTCAGGGGGCAGCCCTAGCCTCCCAGCCTCAGGATCTTACC
AGGCTCTGTCTCCACCCTCCCGCGACTCCCCAGAGCCTGCTCCTGAGCTGCGGGCCCAAG
AGGCCTTGCTACAGGAGCAATTCCTGGACGCCTGCCGGCAGATTGACGAGCTGAGTGTGG
GCAGCGACACCATAGACCTGTGAAGAGGTGGCCTCCTCACCTCCGCGACCTTACGCCCCT
CCTGGCGCCTGTTCTGCCCGAGACCTGCACACTGTAACCCTTCCCCAATCCTGCCTGGCT
CACATACCTCTCCCCGCTTCCTTTCCCATCCAGGGGCCCCTGGATGGGGAGGTCAGCAGC
CAGGCTCTGTTGATTGGGAACTAGTGCCACCTTCTCTGGAGCCCTGGGCGCTGATGCCCT
CAGCTGCAATTCTGGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCGTCCATGCTGCTGTGCTCCAGCCCAGACAGGCCCCCACGCTGTCCGCTGGTCTGCG
TCCTCAGTCCCCCGCGGCCCTCAGGGGGCAGCCCTAGCCTCCCAGCCTCAGGATCTTACC
AGGCTCTGTCTCCACCCTCCCGCGACTCCCCAGAGCCTGCTCCTGAGCTGCGGGCCCAAG
AGGCCTTGCTACAGGAGCAATTCCTGGACGCCTGCCGGCAGATTGACGAGCTGAGTGTGG
GCAGCGACACCATAGACCTGTGAAGAGGTGGCCTCCTCACCTCCGCGACCTTACGCCCCT
CCTGGCGCCTGTTCTGCCCGAGACCTGCACACTGTAACCCTTCCCCAATCCTGCCTGGCT
CACATACCTCTCCCCGCTTCCTTTCCCATCCAGGGGCCCCTGGATGGGGAGGTCAGCAGC
CAGGCTCTGTTGATTGGGAACTAGTGCCACCTTCTCTGGAGCCCTGGGCGCTGATGCCCT
CAGCTGCAATTCTGGGCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.891045
               

               
               317-499, - strand, RNAz p=0.999868

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.891045
               

               
               317-499, - strand, RNAz p=0.999868

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               133-350, - strand, RNAmicro p=0.999862

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               133-350, - strand, RNAmicro p=0.999862

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               317-491, 605811 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB429959.1|), 
blast E-value=0, identity=92.61% 
               

               
               317-499, 000924BEMN023058HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY144979.1|), blast E-value=0, identity=93.48% 
               

               
               317-499, 001013BEMN045537HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY148061.1|), blast E-value=0, identity=92.43% 
               

               
               317-499, 001004BEMN039945HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY150634.1|), blast E-value=0, identity=93.48% 
               

               
               317-499, 000928BEMN020632HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY207594.1|), blast E-value=0, identity=93.48% 
               

               
               317-493, 010125BEMN054343HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY211170.1|), blast E-value=0, identity=92.18%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               317-491, 605811 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB429959.1|), 
blast E-value=0, identity=92.61% 
               

               
               317-499, 000924BEMN023058HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY144979.1|), blast E-value=0, identity=93.48% 
               

               
               317-499, 001013BEMN045537HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY148061.1|), blast E-value=0, identity=92.43% 
               

               
               317-499, 001004BEMN039945HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY150634.1|), blast E-value=0, identity=93.48% 
               

               
               317-499, 000928BEMN020632HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY207594.1|), blast E-value=0, identity=93.48% 
               

               
               317-493, 010125BEMN054343HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY211170.1|), blast E-value=0, identity=92.18%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-499, gnl|bosTau2|chr4 (50143613-50144130)
               

               
               1-499, gnl|Hg17|chr7 (127585123-127584626)
               

               
               1-499, gnl|Mm7|chr6 (29102151-29101643)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-499, gnl|bosTau2|chr4 (50143613-50144130)
               

               
               1-499, gnl|Hg17|chr7 (127585123-127584626)
               

               
               1-499, gnl|Mm7|chr6 (29102151-29101643)

	80-199, - strand, RNAz p=0.891045
	317-499, - strand, RNAz p=0.999868

	317-491, 605811 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB429959.1\|), blast E-value=0, identity=92.61%
	317-499, 000924BEMN023058HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY144979.1\|), blast E-value=0, identity=93.48%
	317-499, 001013BEMN045537HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY148061.1\|), blast E-value=0, identity=92.43%
	317-499, 001004BEMN039945HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY150634.1\|), blast E-value=0, identity=93.48%
	317-499, 000928BEMN020632HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY207594.1\|), blast E-value=0, identity=93.48%
	317-493, 010125BEMN054343HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY211170.1\|), blast E-value=0, identity=92.18%

	1-499, gnl\|bosTau2\|chr4 (50143613-50144130)
	1-499, gnl\|Hg17\|chr7 (127585123-127584626)
	1-499, gnl\|Mm7\|chr6 (29102151-29101643)